RNA id: XM_034307645.1


Basic Information

Item Value
RNA id XM_034307645.1
length 736
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC117598108
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2550305 ~ 2552377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCCACACACTCCTCCAGACAGTATCAGGGCATCATGACCTCCTTTTTTCCATTTGCATCATTATTGGGCACCATGTGTGTGAGCCTCCTCTCTGCAGAAGCTGAGATCACTGTATCTGGCCAAGTGGGGTCTACAGCTGTCCTGCCGTGTGAACTGCAGAGTGTAGGCACTGAAACACCGCATATTAGGTGGTCCATCAAATCTGAGATTGTGTTTGAGCATGTTTTGGGTAAGGAGACCTATCAGGGTGAGGGATATGAGGGCCGTGTGGACGTCCCTGAGGAAGAGCTGCGTAAGGGGAACTGTTCCTTAGTGTTGCGCAATCTGACACTTACTGATGAAGGTGTCTACACGAGCTACCAGATAGTGAAACGCACCAAGAGATCTATCATGACAAAAAGAGAAGATATCAGCCGTGTTAAACTCTCAGTCTATGaAAAACCTCCTGAAAACAGAACTGAAATTCCCACAGaTGATGCAGGAATGAAGTGTCCTCACCCACCGATCATGGTCTTGTCCCTCATATCATGTTTACTCCTCCAGTTCTTCTTTGCGTAAACCTGAGTGTGAATTAGTGGTGCACAGGACTGTGTCTTTATGTCTCCAGCACCACCTGGTGGAagtgttatgtttttgtgttgttctgtTCGCCTGCTTGAATACACAACCTCCTGTCACTCTGTGTGTTACCTGTCAGAAGGTCAGAGCCAAAGCATATAGGGAGGGTCAGACAA

Function

GO: NA

KEGG:

id description
ko04144 Endocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168638 lncRNA upstream 52673 2495996 ~ 2497632 (+) True LOC117598111
XR_004578833.1 lncRNA upstream 52817 2487186 ~ 2497488 (+) False LOC117598111
TU168655 lncRNA upstream 64917 2433614 ~ 2485388 (+) True G142437
TU168635 lncRNA upstream 67796 2430550 ~ 2482509 (+) True G142418
TU168661 lncRNA upstream 72347 2476434 ~ 2477958 (+) False LOC117598104
TU168634 lncRNA downstream 1680 2554057 ~ 2556166 (+) False LOC117598105
TU168670 lncRNA downstream 12115 2564492 ~ 2571547 (+) True G142445
TU168671 lncRNA downstream 27237 2579614 ~ 3008692 (+) True G142446
TU168672 lncRNA downstream 27237 2579614 ~ 2820688 (+) False G142446
TU168679 lncRNA downstream 47216 2599593 ~ 2701711 (+) True G142451
XM_034307634.1 mRNA upstream 72923 2475158 ~ 2477382 (+) False LOC117598104
XM_034307635.1 mRNA upstream 72923 2475158 ~ 2477382 (+) False LOC117598104
XM_034307638.1 mRNA upstream 143473 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA upstream 143473 2398813 ~ 2406832 (+) False LOC117598105
XM_034307642.1 mRNA upstream 166512 2374715 ~ 2383793 (+) True LOC117598106
XM_034307636.1 mRNA downstream 1913 2554290 ~ 2558727 (+) False LOC117598105
XM_034307464.1 mRNA downstream 116750 2669127 ~ 2676154 (+) True LOC117598063
XM_034307465.1 mRNA downstream 116763 2669140 ~ 2676154 (+) False LOC117598063
XM_034307450.1 mRNA downstream 135418 2687795 ~ 2692842 (+) True LOC117598057
XM_034307452.1 mRNA downstream 201052 2753429 ~ 2756267 (+) True LOC117598059
TU168662 other upstream 72347 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 194073 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 252599 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 252599 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 252599 2296959 ~ 2297706 (+) False LOC117598173
TU168667 other downstream 7434 2559811 ~ 2808637 (+) True LOC117598067
LOC113523831 other downstream 639563 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 645499 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 663600 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 665041 3217418 ~ 3217489 (+) True trnac-gca_2

Expression Profile