RNA id: XM_034307648.1


Basic Information

Item Value
RNA id XM_034307648.1
length 2376
RNA type mRNA
GC content 0.49
exon number 7
gene id rragcb
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4468122 ~ 4479494 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggagaagacgAGGTCACGTGATCCCCTGCGCACTAACTTCCGgcttgtgtgtgtagtgaagtcATGTAGCAGAGCAGGCGGAGAGATTATAACcctgtagtgtgtgagagtgtgtaaatgagtgtataaatgagtgtgtaagtgtgtgtaggtgtgtgttactCCTCTTCTgagctgtgcgtgtgtgtgtaaatgagtgtgtagaGGTTTACGTGCTTTAAAGTTGAGATTAGTTTAGAGATTAAACGTTAAACATGTCGGTGCAGCACAGCGCAGAGAGCCTGGCCGGCTCCGGGGCcaatcttcatcatcctcatcatcctcacccTCATcaccttcctcttcctcatcatcatcatcctcaccttcctcatcatcctcaccttcctcatcctcatcacctTCCTCATCCTCAGCTCCGTAAAGAGGAGGATTTGTGTAAAGATGGTCTGGGTTACGGTgtagaggaggaagaggaagaggaagaggaagaggacagTGAGGAGGACATTTCACCTGCACAGGACAACGACAAACCCAAAATCCTGCTGATGGGCCTCAGGCGCAGCGGCAAATCCTCCATACAGAAGGTTGTCTTCCACAAGATGTCCCCCAACGAGACGCTGTTCCTGGAGAGCACTAATAAGATCTACAAAGACGACATCAGCAGCAGCTCCTTCGTTCATTTTCAGATCTGGGATTTCCCGGGGCAGGTGGATTTCTTCGACCCCACGTTTGATTATGAGATGATTTTCAGAGGCACCGGAGCGCTTATCTTCGTCATCGACGCACAGGACGACTACATGGAGGCTCTGGGAAGGCTGCACCTCACCGTGTCCCGCGCCTACAGAGTCAACCCCGACATCAACTTCGAGGTGTTCGTGCACAAGGTGGACGGTCTTTCAGACGACCACAAGAtcgagacacagagagacatccACCAGAGAGCTAACGACGACCTGACAGACGCCGGCCTCGACAAACTGCACCTCAGcttttACTTGACCAGCATCTACGACCACTCGATATTTGAGGCATTCAGTAAAGTGGTGCAGAAGCTCATCCCTCAGCTGCCCACGCTGGAGAACCTCCTCAACATCTTCatatcgaacTCAGGGATTGAGAAGGCGTTCCTGTTTGATGTGCTCAGTAAGATCTACGTGGCCACAGACAGCTCTCCCGTGGACATGCAGTCGTACGAGCTGTGCTGCGACATGATCGACGTGGTCATCGACGTCTCCTGCATTTACGGGCTGAAGGAGGACGGCAGTGGCACTGCGTATGACAAAGACTCTTTGGCCATCATTAAGCTGAACAACACCACTGTGCTCTACCTGAAGGAGGTCACCAAGTTCCTGGCGCTGGTGTGTATCCTGAGAGAGGAGAGCTTCGAGAagaaagGTCTGATAGACTACAATTTCCACTGTCTGAGGAAGGCCATACACGAGGTATTCGAGGTGACCGTCGTCCGGAGGAGCTGCTTAGATGATCAGCTCGACTCTCCTGGCTGCAGCAGCAGCGCTGTTAAAGCTCCGGTGCTCAACGGCACCCCTAGAGGCCGGATGTGACATCACATGGGGCGGGGTCTTCCTCAGGAGGGGAGGGGCTTCTAAACTGAGGAGAATACATGGGCTTTGGGTGTGTCTGCTTCTTGGAGGAGAGCGGGACCTGGAGCAGGTTTAAAGGGTGAACTCTGAATCTGCACTGCTgcattaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgccgtGTGCCGAGATGTCTGTGATTTGTTCAACCATTCTCATCGCTCTTAAAGGGGAACTTCCTACTAAAAAAATTGTACCACAGATCTATTCAATCTACATTCACACTGGAGCTTCAAGGCTATTATAGCGAACAGTTAAGGGAAAACTAAGAGAAAAATCTTGTTCCTTTTTTTGAGAAAACGCAGCGAAGATTTCTGTGAGTTGTTACGAAGTGTTTAGGGTTAACGAGCGTTTTTACACCTCGCAGTAATCGTAGCCTTTCACACTCGCCTCGTCCTGGGAAAATTCCCGATGTCTGACTATTTTTCCAGACTCACTGCTAATTCATTTATTCCACACGGACacaggaataaaaatatttcctttaatcGACATTTTCCGAAAGACATTGTGATATAATCACATGTATAAACATACGATTTTATCTCTGTTTACACCCTTAAGCTGAGAAACTTCTGGAAATATTTCTATTCCTGTGCCTGGGATAAGGAAACGTGGGTGTGTTTGTAGAATCGCTGCTCATTCGTTTATCCCAAGCAGAAGAATTTCCGGAATTTTCTCTGTTTAAAAGTGTGGATCGGGAGAAAACACTACATTTCCGATTACGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16186 RRAGC_D; Ras-related GTP-binding protein C/D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169601 lncRNA upstream 213171 4254724 ~ 4254951 (+) True G143186
TU169600 lncRNA upstream 213454 4254432 ~ 4254668 (+) True G143185
TU169540 lncRNA upstream 341327 4126590 ~ 4126795 (+) True G143125
TU169457 lncRNA upstream 398546 4068358 ~ 4069576 (+) True G143048
TU169408 lncRNA upstream 535102 3926059 ~ 3933020 (+) True G142999
TU169735 lncRNA downstream 11603 4491097 ~ 4543484 (+) True G143312
TU169681 lncRNA downstream 25626 4505120 ~ 4509248 (+) False fhl3b
TU169739 lncRNA downstream 42380 4521874 ~ 4522693 (+) True G143315
TU169740 lncRNA downstream 43768 4523262 ~ 4571638 (+) True G143316
TU169741 lncRNA downstream 44504 4523998 ~ 4559387 (+) True G143317
XM_034307337.1 mRNA upstream 421474 4009919 ~ 4046648 (+) True LOC113523835
XM_026909875.2 mRNA upstream 651499 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA upstream 651499 3702496 ~ 3816623 (+) False khdrbs3
XM_026909877.2 mRNA upstream 651499 3751967 ~ 3816623 (+) False khdrbs3
XM_034307220.1 mRNA upstream 1072086 3384180 ~ 3396036 (+) False LOC113523845
XM_026947326.2 mRNA downstream 5339 4484833 ~ 4508842 (+) True fhl3b
XM_026947325.2 mRNA downstream 46121 4525615 ~ 4530986 (+) False stpg1
XM_034307695.1 mRNA downstream 46475 4525969 ~ 4530986 (+) True stpg1
XM_026947314.2 mRNA downstream 58002 4537496 ~ 4593588 (+) True map7d1b
XM_026947315.2 mRNA downstream 58002 4537496 ~ 4593588 (+) False map7d1b
TU168849 other upstream 1005951 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 1072055 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 1099784 3368205 ~ 3368338 (+) True LOC113523858
XR_003402472.2 other upstream 1101864 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 1103774 3364215 ~ 3364348 (+) True LOC113523857
TU169682 other downstream 5349 4484843 ~ 4505055 (+) False fhl3b
TU169683 other downstream 5389 4484883 ~ 4505055 (+) False fhl3b
TU170101 other downstream 1261464 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 2107717 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 2300495 6779989 ~ 6798904 (+) False G144353

Expression Profile