RNA id: XM_034307653.1


Basic Information

Item Value
RNA id XM_034307653.1
length 4666
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC113529730
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7253320 ~ 7264696 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagaagaagaagcagcagcagcagcagaaaaagaagaagaagaagacgaagaagaagacAGCTGATCCTCTAATCCACTCTCCTGTTCGGCTTTGTTTTTAGCATTATAAAGTTCTTAAAATCAAGACATGATGTGAAAATATAAGTATAGGAGACCATAAAGAAGATATACAAGATAAGCGGCCGAGCGGAGACGCACATTAAAGTCAGACTTTACACGCAcgcacgtgtgtgtgagcgagcgagagagggacagagagagagagagggagagatggagcaGGGAGTGGTGGATAGCCCGGTGGTCCTGGTCATTAAAGCTCCTGATCAGAAGTACGACGATCAAACCATCAGCTGCTTCCTCAACTGGACGGTGGAGAAACTGAAGAGCCATCTTTCCAACGTTTATCCCAGCAAACCTCGCTCGAAGGATCAGAGGCTGGTGTACTCCGGAAAGCTCCTCCAGGATCACTGTAAACTCCGAGACGTGCTCAGAAAGGACGAGTTCCACATGCTGCATCTGGTGTGTGCTTCACGCAGTCCTCCTCCATCACCCACCACACACAGGAGAAATAGCAGCAGCAACCAGCCGACGAACTCTAACACCTCCGGAAGTCCCGCCCCTACAGATCACGTCCAATCAGCTTCCTCAGCTCCTGATAGGCGGAGTCTGAGCTCTAGTTCCAGCTATACTCATCCATCATCAGacggGTCAGCGTGGACGCAGTGGTTTAATCAGCACAGACACAACAGCAACACACCTCACTACCCAATGTACAACCCCCACACCCTGCTGTGGTGGCAACAGCTCTATACCTGGCACTGCCACATGACCTAtcaaaCGTGGGTCGCCTCGCTCAGTCCATCCCAGCAATCGGTCACACCCCCAGATCCCCCTATCAGAGAGGCGCAGGCCGTTGCCCGTGACGACCCCCGGAACGCGCCGGTTGGGGCGGGGCTGAACGAGGAGGATTTGAACCGTGATTGGCTGGATTGGGTGTATGCAGCGTCTCGAGCGGTCGTCCTCCTCAGCCTCGTTTATTTCTATTCATCGTTCAGCCGATTCGTCATGGTAACAGGAGCCATGCTGCTGCTCTACCTGCATCAGGCGGGTTGGTTACCCTTTAACCTGGACAATGAGCTGCAGGACCTCGCTGAACCGGCCAATCACAATCAGGATGAGCCAAACGCAGACAATCGCAACAACACGGATCAGCTGGCAGATGAaggtgaggatgaggaggaacaGCGAGAGGGaccagatgatgatgatgatgatgatgaggatgactatgatgaggatgatgatgatgagggatGGGTGAACATGGGATTCCTCTCCTCCACTTGGTCCTTCATCACCACCTTCTTCGCATCTCTGATCCCTGAGGCCGTTCCCAATGCAGTGAACTGACCCTGAGCTTGACCCCTGACCCTGAGCTTGACCCCTGACCCTGAgatatctctccatctcttaaACAACCCTACAGAAATGACCAGGACTTGAGCAGAGAAGAGCATGTCCGGACAAACCTCACCAAATCTCTGATAGGAAGCTGTGAGTGTTAGAAACAAACGTCACACACACGTTTCCTCAGTATATCATGAACGTATTGTGAAGACTGATCCTCAACCTTGTGCGAAGTGGCTCACACCATGGACTTGTTAgcttttaaaattgcattttataatCCTCTCGCGTGTTTCTGTCCTTTTAACACGTCTCTTGTAATTAAGAATCCTTCTTAGAGCCTCAAAGAGGGACGTCGAACAAACAACAGCATCTGTGCactttatatttctaaaaaaaaaaaaaaaaagagcgagtgtgtgtcggtgtgtgtgtcttcacaaGAGCTGTCCCAATTTCCCCTTTTTTAAACACTAAGTGTACTGCTGATGACATGAAGTGttcttcagcatttttttacattcatttttaatcctTCACCTGCTTGTTCTTGTATCATCTTTCATTGTCTTCATTTATTCAAAGGCTTTTCACACACGGTTGAAAAAAGGTTGCAGAGGAAGTCGGAGCTTTTCTGAAAACCAAGCGTGAATGCATCAGCCTTTTTTCCCTAGAATCAAAGAGATGTCTGCAGTTCATTGAAAATTCCACGGCGcaatttgtgtcttttttaagatgtttaatGATTCTGCAATGTGGTTATTAATTAAGAGCTTTAGGGTTTGGATTATGGCCTGTGTTAAACTTTAGGAAATGGGAGGGAAAAATAACTACACAAACGTTTAATAAAGACATTATCATCTTACCAAGACATTAATTCTTATCTAAACTAAATTACCCAAATTCAGATTCGATGATTCTATACAAGATTCATTTGTTGAAAGTCAAAAGGTGACCCACTTTAGAGTTGTGTATCCGAAACTACTAAAAAATGTGCCATGGTTCCTTTCTGCCAGATCTAAATTTGCACTTTCCTTGTTTGTGGTGCATGTAACAtgcaatatacactcaccggccattttaataggaacacctgtacacctgctcattcatgtaatcatttaatcagccaatcatgtccCAGCAAAACAGGAAATGTGAGGCTACATTGGGCACGGGTTCACTCAAACTGGACCAACGATGTTTTTCCAATCGtcacctgtccagtttcagtgagcctgtgcctattcttggctgacaggagtggaccccgatgtggtcttctgctgttgtagcccatctggcTCAtggtgatgcttttctgctcaccacggttataaagagttgttatttgagttactgtaggcttcctgtcaactcaaaccagtctgcaTGGTGTTATGCATTGttctgctgattggctgattgcatgaATCAACAGGAGTAAAGTAGCCGGTTACTATAAGGAATAGCTTTTAATTTAGAGTTTTTTGGGGtaaacatgcaaacacatttttacacgtGGAAGTGTCAGTATTGTTTCATTCGCCTGGGGTAGTGAACCATGgtccatttatttttgcagcagtatgtgtgtgtttctcattgTTTCAGACCCTCACGGTATTAAAGGTACTCAAGAGGCTGACATTTATTTGCTGGTTATTCCTGCAGTTACGATGACAGAAAACTGGCATTTGCAGTAAAATTTTAGAAATCTGAGTTAGTTATGAGGCAGCGAAGTGACAAATCCAATAAATGATCTACTCTCAGTTGCCATTCAATAGAAATCATGTAACCAGAGtcccatattttattttattaagataCTTTTAAAGCCGAAGTAACATggtgttatatagtgtattaattaTATGGTGCGTTTACCATATCATGATTTCTTATCTGCTTTCtgagccacgcccacaaacGACAAAATTAGCAGCCGCTAGATGCTCACAAGAGACAAACCTGGACTAACATGGGAGCAGCTGGAGCGTGCTAGAGTTTCACTTGACCGCCCAAAACATTCAGCTTACTATGTAGGTCCATTCAATAAGaaacaagttttatttttagttgaTTTTACATGATTCAAAAATTCTTCCAGGCACGTAACATGTTCGCAGTGTGATAAGGCTTTGTGATAAGAGGTCATATTGTACACCTGCAGCATGGATAGGGCTTTTAGCTTCAAACTggaatggagtgtgtgtgtgtgtgcatgtgtgatggTGATTCTAACTCCAAATTATCCAAAGTGTTTGAGCAAACATTTTATTCTCAAGCTCAGTGTGAATATGAGTGATTGGTTCAGAAAGATGGCAGTGTTATTAATATGCGTatttatccagtcagccaatcatgtggcagcagaacaggaatctgaggctacagtgtctgacaggactggaacctGAGGTGGCCTTCTTCTGTTAGAgcctgtgttgtgtgttttgagatgcttttctgctcactacggttgtaaagagtggctatttgaggaactatagacttcctgtcaggttGTAGCAGTCTGACCATTTACCTCTTAAGGAAGCAATgtagaaaatacattttatgcatCATTTGATTGGTATTTTGTTGCTTTAGAGTTTAGAGTTTCAGTTTTAGATGAATATGTTTAAAAGGTCAGAATATTCCAGGATGCGTGACATGCAAGAGAGACGGGTGAAACTTATTTTGGGATTTCTAGCGAACAGTTTTGCACAACTGTACGAAACTTAATAAAAGTTATAACTTAAAACCACAGAATTTAGATTTTGAGGATAATGTCATTATGttctcagtttaaaaaaaaaattggtctaATTAGAAACCAGATGTCAGGGTCTAAATCACTAGAGGGCGACAGAGCACAAGCTACAGATTTGAGACTGTGGTTTTGCACATGACAACACCATAAATGTATAAAGCTGGTTCAAATGTAAGATGCAAACTGAGTGCTCATTTCACTCTTGGACATTTCATACATAAGTTACTTGTGCATTGATTTGTGAAGgcataaaaatattcaaatttttGACAGTTTTCATCCTACAAAAATGAAACTTAATCAGGCTTGATGTACTGATtgtactatatttattatgacaattttgaccaaaatgaaataaactttaaaaaaaaacctaaaatgcTTTGTgaattatacacacaaacaaggagTTATTGAGTTTCAATCAAATTCATCACCTCTGTGtgtcactgaaataaaaacccAATTATACAGAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403117.2 lncRNA upstream 113948 7132850 ~ 7139372 (+) True LOC113530161
TU171111 lncRNA upstream 116405 7132850 ~ 7136915 (+) False LOC113530161
XR_004578812.1 lncRNA upstream 116605 7132850 ~ 7136715 (+) False LOC113530161
TU171076 lncRNA upstream 291382 6958600 ~ 6961938 (+) True G144444
TU171074 lncRNA upstream 295156 6957637 ~ 6958164 (+) True G144442
TU171170 lncRNA downstream 154065 7418761 ~ 7420820 (+) True G144523
TU171231 lncRNA downstream 183174 7447870 ~ 7448531 (+) False gabra6a
TU171240 lncRNA downstream 310412 7575108 ~ 7575491 (+) True G144568
TU171367 lncRNA downstream 311364 7576060 ~ 7576788 (+) True G144661
TU171371 lncRNA downstream 313432 7578128 ~ 7578377 (+) True G144665
XM_026947362.2 mRNA upstream 519406 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 519406 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 573151 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 573994 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 659760 6587367 ~ 6593560 (+) False LOC113547098
XM_026918781.2 mRNA downstream 117382 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 124803 7389499 ~ 7400424 (+) False LOC113529540
XM_026918647.2 mRNA downstream 136801 7401497 ~ 7418528 (+) True sfxn1
XM_026918713.2 mRNA downstream 158173 7422869 ~ 7434230 (+) True LOC113529491
XM_026920013.2 mRNA downstream 174999 7439695 ~ 7444266 (+) True ccng1
trnag-ccc_3 other upstream 27772 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaw-cca_12 other upstream 296804 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 300447 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 302177 6951072 ~ 6951143 (+) False trnaw-cca_10
TU170948 other upstream 333659 6895105 ~ 6919661 (+) False G144353
trnaa-agc_3 other downstream 344345 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 347074 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 349809 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 355241 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_7 other downstream 369802 7634498 ~ 7634570 (+) True trnaa-agc_7

Expression Profile