RNA id: XR_004578868.1


Basic Information

Item Value
RNA id XR_004578868.1
length 340
RNA type misc_RNA
GC content 0.38
exon number 3
gene id LOC117598174
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2288098 ~ 2291206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAATGCTTTTAGCTGAAATACTTTACTGGATCcaacagttattttaaaaaattgttggtttttttttattcatatttagacTGTTAGATTTTTACTGCTTCAACAACGTTGaggttaaatttttttcatgagTAGAGCAGCAGCATCAGTACACGAGTGAACATGAACACGATCTCGATTACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168578 lncRNA upstream 1957 2280360 ~ 2286141 (+) True G142391
XR_004578870.1 lncRNA upstream 8211 2279183 ~ 2279887 (+) True LOC117598179
XR_004578871.1 lncRNA upstream 8211 2279476 ~ 2279887 (+) False LOC117598179
XR_004578679.1 lncRNA upstream 61302 2220567 ~ 2226796 (+) True LOC113545551
TU168530 lncRNA upstream 61319 2220676 ~ 2226779 (+) False LOC113545551
TU168565 lncRNA downstream 10345 2298984 ~ 2301918 (+) True G142385
XR_004578869.1 lncRNA downstream 10537 2299176 ~ 2300055 (+) True LOC117598178
TU168603 lncRNA downstream 46570 2335209 ~ 2344105 (+) True LOC117595676
TU168606 lncRNA downstream 70160 2358799 ~ 2359457 (+) True G142411
TU168646 lncRNA downstream 83485 2372124 ~ 2372355 (+) True G142429
XM_034307694.1 mRNA upstream 10102 2276999 ~ 2277996 (+) True LOC117598177
XM_034307693.1 mRNA upstream 13335 2273591 ~ 2274763 (+) True LOC117598176
XM_034307147.1 mRNA upstream 16512 2270059 ~ 2271586 (+) False LOC117597926
XM_034307146.1 mRNA upstream 16512 2270469 ~ 2271586 (+) False LOC117597926
XM_034307393.1 mRNA upstream 28624 2257540 ~ 2259474 (+) True LOC117598027
XM_034307689.1 mRNA downstream 1038 2289677 ~ 2291206 (+) True LOC117598174
XM_034307688.1 mRNA downstream 1614 2290253 ~ 2291206 (+) False LOC117598174
XM_034307691.1 mRNA downstream 4750 2293389 ~ 2294516 (+) False LOC117598175
XM_034307692.1 mRNA downstream 4979 2293618 ~ 2294516 (+) True LOC117598175
XM_034307687.1 mRNA downstream 6520 2295159 ~ 2297706 (+) False LOC117598173
XR_004578872.1 other upstream 8211 2279079 ~ 2279887 (+) False LOC117598179
XR_004578666.1 other upstream 16512 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other upstream 16512 2270450 ~ 2271586 (+) False LOC117597926
TU168470 other upstream 172106 2115040 ~ 2115992 (+) False LOC113545687
TU168103 other upstream 667437 1615178 ~ 1620661 (+) False LOC113523891
XR_004578865.1 other downstream 7654 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other downstream 7994 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other downstream 8320 2296959 ~ 2297706 (+) False LOC117598173
TU168604 other downstream 50810 2339449 ~ 2356232 (+) False LOC117595676
TU168662 other downstream 186565 2475204 ~ 2477958 (+) True LOC117598104

Expression Profile