Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402460.2 |
| length | 610 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 2 |
| gene id | LOC113523814 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 3183316 ~ 3184699 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003402461.2 | lncRNA | upstream | 6333 | 3174738 ~ 3176983 (+) | True | LOC113523815 |
| TU168773 | lncRNA | upstream | 6335 | 3159446 ~ 3176981 (+) | False | G142521 |
| TU168743 | lncRNA | upstream | 72996 | 3109517 ~ 3110320 (+) | True | G142504 |
| TU168740 | lncRNA | upstream | 78673 | 3103419 ~ 3104643 (+) | True | G142502 |
| TU168741 | lncRNA | upstream | 78673 | 3104072 ~ 3104643 (+) | False | G142502 |
| TU168768 | lncRNA | downstream | 7412 | 3192111 ~ 3199331 (+) | False | G142521 |
| TU168769 | lncRNA | downstream | 13009 | 3197708 ~ 3199331 (+) | False | G142521 |
| TU168783 | lncRNA | downstream | 19762 | 3204461 ~ 3215786 (+) | False | LOC117598172 |
| XR_004578864.1 | lncRNA | downstream | 26664 | 3211363 ~ 3215777 (+) | True | LOC117598172 |
| TU168782 | lncRNA | downstream | 44607 | 3229306 ~ 3230300 (+) | True | G142524 |
| XM_034307287.1 | mRNA | upstream | 29470 | 3146038 ~ 3153846 (+) | True | slc39a7 |
| XM_026909916.2 | mRNA | upstream | 59602 | 3118288 ~ 3123714 (+) | True | rps18 |
| XM_026909910.2 | mRNA | upstream | 121979 | 3055623 ~ 3061337 (+) | True | LOC113523850 |
| XM_034307445.1 | mRNA | upstream | 150790 | 3014082 ~ 3032526 (+) | False | LOC113523823 |
| XM_026909884.2 | mRNA | downstream | 109100 | 3293799 ~ 3308324 (+) | True | cratb |
| XM_034307426.1 | mRNA | downstream | 161873 | 3346572 ~ 3356643 (+) | True | ppt2b |
| XM_026909905.2 | mRNA | downstream | 177701 | 3362400 ~ 3368547 (+) | True | rps5 |
| XM_034307220.1 | mRNA | downstream | 199481 | 3384180 ~ 3396036 (+) | False | LOC113523845 |
| XM_026909906.2 | mRNA | downstream | 203564 | 3388263 ~ 3396036 (+) | False | LOC113523845 |
| TU168667 | other | upstream | 374679 | 2559811 ~ 2808637 (+) | True | LOC117598067 |
| TU168662 | other | upstream | 705358 | 2475204 ~ 2477958 (+) | True | LOC117598104 |
| TU168604 | other | upstream | 827084 | 2339449 ~ 2356232 (+) | False | LOC117595676 |
| XR_004578867.1 | other | upstream | 885610 | 2296633 ~ 2297706 (+) | False | LOC117598173 |
| LOC113523831 | other | downstream | 7241 | 3191940 ~ 3193368 (+) | True | LOC113523831 |
| LOC117598030 | other | downstream | 13177 | 3197876 ~ 3199324 (+) | True | LOC117598030 |
| trnac-gca_1 | other | downstream | 31278 | 3215977 ~ 3216048 (+) | True | trnac-gca_1 |
| trnac-gca_2 | other | downstream | 32719 | 3217418 ~ 3217489 (+) | True | trnac-gca_2 |
| trnac-gca_3 | other | downstream | 34450 | 3219149 ~ 3219220 (+) | True | trnac-gca_3 |
