RNA id: XR_003402471.1


Basic Information

Item Value
RNA id XR_003402471.1
length 134
RNA type ncRNA
GC content 0.52
exon number 1
gene id LOC113523858
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3368205 ~ 3368338 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcGAGACTAGAGTCACATCCCGACGCTGTTCGTCGTCCTGGTGTGCTATAGCTCTCGCAGATTAATCCCTCTCTGCTTATTCATTGGCTGCTGCTTCTCCATCGCTCAGCCAATCACCAGCTCAGAAACACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168808 lncRNA upstream 16086 3283128 ~ 3352119 (+) True G142545
TU168817 lncRNA upstream 47037 3312761 ~ 3321168 (+) True G142553
TU168782 lncRNA upstream 137905 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 152419 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 152428 3211363 ~ 3215777 (+) True LOC117598172
TU168839 lncRNA downstream 11383 3379721 ~ 3381739 (+) True G142573
TU168855 lncRNA downstream 22567 3390905 ~ 3391147 (+) True G142580
TU168854 lncRNA downstream 25434 3393772 ~ 3396067 (+) False LOC113523845
TU168850 lncRNA downstream 29332 3397670 ~ 3400823 (+) True G142576
TU168842 lncRNA downstream 47184 3415522 ~ 3434049 (+) False G142575
XM_034307426.1 mRNA upstream 11562 3346572 ~ 3356643 (+) True ppt2b
XM_026909884.2 mRNA upstream 59881 3293799 ~ 3308324 (+) True cratb
XM_034307287.1 mRNA upstream 214359 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 244491 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 306868 3055623 ~ 3061337 (+) True LOC113523850
XM_034307220.1 mRNA downstream 15842 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 19925 3388263 ~ 3396036 (+) False LOC113523845
XM_026909875.2 mRNA downstream 334158 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA downstream 334158 3702496 ~ 3816623 (+) False khdrbs3
XM_026909877.2 mRNA downstream 383629 3751967 ~ 3816623 (+) False khdrbs3
XR_003402472.2 other upstream 1947 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 3857 3364215 ~ 3364348 (+) True LOC113523857
trnac-gca_12 other upstream 107260 3260874 ~ 3260945 (+) True trnac-gca_12
trnac-gca_11 other upstream 107793 3260341 ~ 3260412 (+) True trnac-gca_11
trnac-gca_10 other upstream 108326 3259808 ~ 3259879 (+) True trnac-gca_10
TU168853 other downstream 19915 3388253 ~ 3396067 (+) True LOC113523845
TU168849 other downstream 29332 3397670 ~ 3462171 (+) False G142576
TU169682 other downstream 1116505 4484843 ~ 4505055 (+) False fhl3b
TU169683 other downstream 1116545 4484883 ~ 4505055 (+) False fhl3b
TU170101 other downstream 2372620 5740958 ~ 5747944 (+) False gpx3

Expression Profile