RNA id: XR_003404779.2


Basic Information

Item Value
RNA id XR_003404779.2
length 4386
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC113547099
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6422136 ~ 6428434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccacacacattcatgcacttGTTCACACCTAGGGTCAATTTAGAGtccacctgcatgtttttgggagatcaGAAGAAACCAGacgaaacccacatggacaaggCAGAAGCAGATGAGATTAATAATAAGGAAATGGAAATAAGTATAAGCAAAACAAGTTGCTAAAGACTGATGTGTTGGACGGAGGGCTGGGAGCCAttttgtcccaggtggtggaggcaGAGGAGCACCTTGTTCTGTACATCAGCCGTGAGGGAGACCATTTACAGCACCATCTAGAAGGAGTGTCTGTCCATCAAGTGGGCAGTCCTCAACCTCTGATACTACCTGTTGGGGTGCCCTTTCACCCTGTGTTCCAATCACATCCTGCTCCAATGGCTCCACCACATGAAGGATGCCAACATGTGGATCACTTGTTGGCATCTGGCACTTCAACCATTCAAATTCAAGATGGTCCACAGACTGGCAGCACAGACGGTGGTGGCAGATTACCTCTCCTCTCAGGGGGGGGAGTCAGCTGCAGGCAAGACAGCTCCCTGGCCTGAGTTGGGCGGTGGGGGTATGTGGTGGCAAGGGTGTGGTCGAGTGTCAGCTGTGAATGGAGATGAGGCAGGTCGAACCAGAAGATGCCTGGACCTCCTCCCTATCCAGCCCCAGAAGGCTGACAAGAGCTGGCCCATGTCCCTCAACTGTCTGCTCAACCCTCTGCACCAGCCGAAGAAGAACCGCGGGGTGCTGTAGGAGGACTGGATGAAGGGGCTGACATGAAAAGTCATACCAGGTCCGGTGGCTCATTTCAATCCCTGACTCCTGAGACTGGTGAGAAACAAGAACCAGAGCTGAACCAGATGCCTTTGATCAAATTCCTGAACCAGATGGCTGGACAGGATGCTGGAGGTAGTAGAGTGCATCCTGAGGCTGTGTACATTTTTCAGCCATTTGAGTTGTCTGAAATAGACTCGATGGTCAAAGACATCATGTGTCCCAAAGTGAATGTAGATCAGTGCATCAAAGACTTGGAAGCTGTTGATGATATGGTCAATCTGACCAATCAAGAGTGGAATAAATTCATGGCTAGAGTCTTTGGGCTGAAATGGGAACAAGAAGTGAGCTGAGCATCCATGGGAGCCCAATGCAATTCGACACGCTGAGCATCGTCACATGAATTGGGACCACCTGATGAGACAAATCAAAGACACCTTCCTGCATTGGCTGAAAGAATAAAGACTATACCGAGCTGATGGATCATGCTGAAAGATCCCTGATGGACAAACAAAGTAAGACCCAGAACTCTCTTCAAATGGCACAACTTCAATTCTATCAAGACAATCAACAGTTTGGGAGAGGAAATGGTGGCTATCGAGGGAGGGCGTTGTTGAGGCTGAAGTGTTGGTTGAGGCTGTGGTCAAGGTAGAAGCACCTATGGTGCTTGTTATTGTGGCCAGCTAGGCCATTTTATAAGAGATTGTCCACAGTTGTTAGAACAACCAAGTTCCTAAATTCGAAGTTACAACACCTAGACAGACATTGGATGAGGTGGAGGAACAGAATGTCATAAACCAAAATTTGCAATTAACCATTGATTCTAAAACAGAGCCATTTATTGAGTTAACTGTTAAAGGTAAAGTAATTCCCTTTATGGTAGATACATGCTCAGTATTGTCTAAAACTGTGCTCCTTGttcagtttttatatttactgttgGGTGTCAGGTGCCACTAAATTAGGGTCCAAATTGATTGGTCATAAGTTCGTAGTTTCCAAATGCTGTCCTGTTAAACTTATGGGAAGAGATTTGTTAACAAGgtttaatattcacatttcatGCCATTTCAATGAAATTGGTCTATTTTCATTGTGTCATCCTAGCTTGTGTTTTTACTCATGGAACGTCACGGACTGTGTTACATCCCGGTCCTTGTATTCCAGGGTAGCACAGAGGGATGGgaatttttgcattgcactaGTCTGTTCCTCCACACTGGTCCTGATGCCACTTATGAAAATTATTGGTTTCCAGGGTCTTCAAATGAAAGTTTGATAATTGGTGATATATTTCAGAGTGATCAGTTTATTGGCACACCTGTAGAACTCAACCGTGAGCAGCAATCTCTATTTAGGGTTGAAGAGAGTGTACCTCACATGGCTAAAAAAGGAGGCAGTTGGAAGGAAGTTGGCAAGTGGATGAAGAGTGTGTTAGCATGTAGGGATTAGATAAATGAGGGTGCCATTAGTTTTTCACCATCTTTACAAACAAAGCGCTTTTCTAACTAGACAGGATGTATGTGTGGGGTCTGATGCATCAGCAGTagaaacatttccatttttagaCAGAATCCCAACAAAATTGTGGTCCAAAGAATTGTTTGATATTGGTGTGATGAAAAACAGTCAACCATTGCAGGTGGATACCAAATCGAATTATAGGCCTTATAGACCACAGTATCCTCTTTCAGCTGAAGCTGAACAAGCTGAACTTTTAAAGAAGGGAGCAATTTCTCCCTGTACACACTCCCCTGTTTCCAGCCCTTTGTTAGCATTAAAAAAGGATAATGGTAAATACATGACGGTGCAGGATTTAAGACTTAATTAAATTTAAGTAAATGAGGCTATTTTTACATCTGTACCTATTATTCTAAATCCTGCTACAATTTTATCTGAGATCCCACCCACAtctcagtattttttatttattgatttttttatttattgatagacAGTAGTTACTActtcaatttttgttttaatggtaAGCGCTACCAATGGATGATGACAAGAGTTTTTACTGATTCCCCAAATTTCTTTACCACACAGTTACTACAAAATTTAGAGTCATTTGTAGCACCTGCTGGTAGCACATTGATCATTTATGTAGCTAAGCGTCCATTGGCAAGCCCCAGTAAAGAAGCCTGTTGTCATGATACTGAGGCTCTGCTAATATTTCTTGCTGAAAATGGCCATAAGTGCACACGTGACAAGTTGCAACGGATTAAACAATCTGTGAAATATTTTGGTCATATTATTTCCAATAAATATAGACAGATCAACCCAGCTAGGATAGTTTCAATTTCTAAGTTACTCAAACCTCACACCAAGAAGCAGGTTATGTCACTTCTTGGCATGTTAAATTATTGTTGTGCTTGTATACCTGATTATGCAGAAATCTCCCAACCATTATCAGATCTAGCTCACAAATACCCCATTCAGATGAATGTTCCAGTAATATCGACAGAAGAAGCCACAGCTATAACACCTTAAATCTGCCTTAGCCTGTTCTCCTTGTCTGGGTAACTCAGATTATGCTAAACCCTTTAGATCGAACACCAGGTAACTAACATTTCAgaatgctttatttttgttacaaaaTGTGACTATACACAAGGGCACCACTTTAAATCCAGCAACTCTTCTCCCCACCATTGAAGACAGTGTGCCACAGTTCTATTTGACGGTACTGGACATAATATCTAATACGACCTGACTTGACTGACATTCCTAATCTAAATTCTGACTGCATTTATTTTGTTGATGGTTCTAGTCTGAGGTTGTCTGATGCTTTACTGTCATTTGCTTATGCTGCATGTGATCAACATTCAGTTGCATTTAGAACATTGCTGACATGATTCTGTGTCACGTGGAAATGCATTAGCTGACTTGCAGACTGTGCAGACACAtgatacacacactctgctggTACAGCCAGATGTCAATCTCACTGATCTAAATGAGTTACCTCTCTTACAACAAGCTGCTATGATACAGGAACTGAAACTGTGGAAAGCACACTGCAGAGAGGATCCAAAATCAGACACATGGCTGGATGATCAGAACAGACCAGCCATTCCAAAAACTATATACTTCCCATATTTGGCAAAACTCACTCATGCCATGGACCACGTATCTAAGGGAGGTATGCTAGACTTGGTAAATAAATACTGGTACGCACCTAGCTTTTCAACTTTTGCAACACAATTTTGTGATGTTTACAAACAAACATTGGTAATATTCTTCAGAGTGCACATCCCGCACCTGATGCACTTTTGAGCATCTGTTGATGGATTTCATTGAACTTACTCCTGCTCAAGGATACAGCTATTGTCTAGTAATAGTTGTCTTGCAGGAGACAAGATGCACTTACAGGCTAAACACTTCATACATGACGTCATACGTGTGAAGAACATGATGGTGAGGAAGATAGGAGGTGGCACTTTTGTTAATATATGATAATCacgtttgccttgcacctctgggtTTGGGGGTTTAAATCCCACCTCtgtcctgtgtgtgagtgtagtttgccggttctccccgtgctttgggggtttccttcaggtactctggtttcctcctccactccaaacacatgcattgtaggctgactggcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170524 lncRNA upstream 64216 6356317 ~ 6357920 (+) True G143987
TU170347 lncRNA upstream 437758 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 485807 5932581 ~ 5936329 (+) True G143772
TU170260 lncRNA upstream 498384 5922811 ~ 5923752 (+) True G143766
TU170248 lncRNA upstream 509395 5910983 ~ 5912741 (+) True G143757
TU170785 lncRNA downstream 115938 6544372 ~ 6544916 (+) True G144221
TU170834 lncRNA downstream 199917 6628351 ~ 6684107 (+) True G144256
TU170960 lncRNA downstream 354904 6783338 ~ 6830066 (+) False G144353
TU170964 lncRNA downstream 354904 6783338 ~ 6915019 (+) False G144353
TU170970 lncRNA downstream 354904 6783338 ~ 6877401 (+) False G144353
XM_026947395.2 mRNA upstream 6750 6404746 ~ 6415386 (+) True proza
XM_026947309.2 mRNA upstream 119571 6297766 ~ 6302565 (+) True ndufb9
XM_034307383.1 mRNA upstream 174431 6120616 ~ 6247705 (+) True syngap1a
XM_026947306.2 mRNA upstream 304599 6108863 ~ 6117537 (+) True scn1bb
XM_026947313.2 mRNA downstream 158933 6587367 ~ 6593560 (+) False LOC113547098
XM_026947355.2 mRNA downstream 177387 6605821 ~ 6679326 (+) True LOC113547127
XM_034307439.1 mRNA downstream 251050 6679484 ~ 6680169 (+) True LOC117598051
XM_026947362.2 mRNA downstream 264359 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA downstream 269878 6698312 ~ 6733914 (+) True LOC113547131
TU170101 other upstream 674192 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1917081 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1917081 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2959965 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 3026069 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 158777 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 351555 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 355082 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 368375 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 368538 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile