RNA id: XR_004578676.1


Basic Information

Item Value
RNA id XR_004578676.1
length 578
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id LOC117597935
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 675824 ~ 677329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtggtcactgtAATGTAACAGAGGTTTTTGTACGACGGCTTCATTAGAATGTATCACTGTGGTACACTTTCGGTGGAGGAACCAAACTCATCATCACCGGTCCCACGGTGAAGCCCTCCGTGTCtctgctccctccctcctctctgcagctgtctgagggatcggcctcgctgctctgcctgctgtctgCCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCCCAGGTGAAGGACGGGGTTCTGACCAgcgcagaagaacagaagaaggacggttacacacgcagcagcaccctgaccctcagcaaagcactctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGCGTCAATCATCCGGTCACGTTCAGAAAGAGCCAGTGTGACGCCTAACAGCTCCAAGATACAATTTAACACTGAGCTGCTTACACATCCATCTACAATAGAGTTTCAGTTCtacacaatgctgacatttctgtctttactctcttcactgtcctgttgctcttcctgtagttttgctctgctgaaataaagcttccttttgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167564 lncRNA upstream 67192 478072 ~ 608632 (+) True G141722
XR_004578875.1 lncRNA upstream 67579 600873 ~ 608245 (+) True LOC117598182
TU167581 lncRNA upstream 69556 549350 ~ 606268 (+) True G141731
TU167588 lncRNA upstream 85460 588877 ~ 590364 (+) True G141738
TU167552 lncRNA upstream 173418 415274 ~ 502406 (+) True G141711
XR_004578815.1 lncRNA downstream 47230 724559 ~ 725725 (+) True LOC113525695
XR_004578764.1 lncRNA downstream 63500 740829 ~ 742229 (+) True LOC117598010
TU167735 lncRNA downstream 72366 749695 ~ 752390 (+) True LOC117598011
XR_004578765.1 lncRNA downstream 73239 750568 ~ 752101 (+) False LOC117598011
XR_004578841.1 lncRNA downstream 133371 810700 ~ 812196 (+) True LOC117598138
XM_026911544.2 mRNA upstream 231376 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 345840 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 542417 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 548486 115546 ~ 127338 (+) True fabp10b
XM_026911870.2 mRNA upstream 560889 102820 ~ 114935 (+) True LOC113525374
XM_026909968.2 mRNA downstream 785116 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 819144 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 819192 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 857538 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 860830 1538159 ~ 1540467 (+) True LOC113523893
TU167477 other upstream 440303 212948 ~ 235521 (+) True G141647
TU167368 other upstream 579764 93086 ~ 96060 (+) True G141566
TU167690 other downstream 63520 740849 ~ 742201 (+) False G141823
TU167699 other downstream 89726 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 190340 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 264692 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 333340 1010669 ~ 1061264 (+) False G141825

Expression Profile