Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578686.1 |
| length | 924 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC117597941 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 16230614 ~ 16231809 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU177246 | lncRNA | downstream | 2321 | 16224977 ~ 16228293 (-) | False | acsbg1 |
| TU177243 | lncRNA | downstream | 10992 | 16141119 ~ 16219622 (-) | False | acsbg1 |
| TU177091 | lncRNA | downstream | 135439 | 16093072 ~ 16095175 (-) | True | G149495 |
| XR_004578675.1 | lncRNA | downstream | 137684 | 16068429 ~ 16092930 (-) | False | LOC113529609 |
| XR_003403074.2 | lncRNA | downstream | 137684 | 16068429 ~ 16092930 (-) | True | LOC113529609 |
| TU177252 | lncRNA | upstream | 1620 | 16233429 ~ 16238108 (-) | False | G149631 |
| TU177268 | lncRNA | upstream | 17352 | 16249161 ~ 16251085 (-) | True | G149643 |
| TU177277 | lncRNA | upstream | 22838 | 16254647 ~ 16255486 (-) | True | G149649 |
| TU177254 | lncRNA | upstream | 78081 | 16309890 ~ 16317926 (-) | True | G149632 |
| TU177366 | lncRNA | upstream | 190857 | 16422666 ~ 16424604 (-) | True | G149718 |
| XM_034307238.1 | mRNA | downstream | 2280 | 16219376 ~ 16228334 (-) | False | acsbg1 |
| XM_026918913.2 | mRNA | downstream | 2283 | 16219376 ~ 16228331 (-) | True | acsbg1 |
| XM_026919721.2 | mRNA | downstream | 31499 | 16180917 ~ 16199115 (-) | True | cib2 |
| XM_026919337.2 | mRNA | downstream | 64615 | 16141596 ~ 16165999 (-) | True | tbc1d2b |
| XM_026918887.2 | mRNA | downstream | 89710 | 16122648 ~ 16140904 (-) | False | dapk2b |
| XM_026918917.2 | mRNA | upstream | 4334 | 16236143 ~ 16238157 (-) | True | rps27l |
| XM_026919995.2 | mRNA | upstream | 19535 | 16251344 ~ 16254496 (-) | True | LOC113530180 |
| XM_026919070.2 | mRNA | upstream | 24701 | 16256510 ~ 16262939 (-) | True | LOC113529693 |
| XM_026919996.2 | mRNA | upstream | 33753 | 16265562 ~ 16267986 (-) | True | trpm1b |
| XM_026919384.2 | mRNA | upstream | 94133 | 16325942 ~ 16362375 (-) | True | otud7a |
| XR_004578830.1 | other | downstream | 238520 | 15990080 ~ 15992094 (-) | False | islr2 |
| XR_004578773.1 | other | downstream | 1002582 | 15220972 ~ 15228032 (-) | False | LOC113529695 |
| TU176301 | other | downstream | 1142598 | 15086123 ~ 15088016 (-) | False | dynlrb2 |
| TU176092 | other | downstream | 1417909 | 14810004 ~ 14812705 (-) | True | G148647 |
| TU175596 | other | downstream | 2397725 | 13825897 ~ 13832889 (-) | False | LOC113529512 |
| XR_003403120.2 | other | upstream | 521367 | 16753176 ~ 16753281 (-) | True | LOC113530224 |
| TU177725 | other | upstream | 821557 | 17053366 ~ 17058906 (-) | True | LOC113529460 |
| XR_003403060.1 | other | upstream | 1522575 | 17754384 ~ 17760039 (-) | True | LOC113529452 |
| XR_003403059.2 | other | upstream | 1974344 | 18206153 ~ 18214487 (-) | False | fnbp4 |
| XR_003403119.2 | other | upstream | 2072829 | 18304638 ~ 18304801 (-) | True | LOC113530223 |
