RNA id: XR_004578776.1


Basic Information

Item Value
RNA id XR_004578776.1
length 1304
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117598045
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 376387 ~ 379127 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagacttgtCAGAGCTTGTGGAGCCTCCTGTCGTCACGGAAACACACAGCTGCCAGGACGACCAGCTCTGGACATCAGCTCCAGAAGTGAAGTGCCACTCTGGAATGAGCAGCTGACCCGATGGACAGAGCTCATGGCCATGTGGGGTCTGCAGATTACAATCCTCGAGCCTAGTTCCCTTCCCTGTGtcgaggtcagacactgatccCATCCTGATCTTAAGCCTTCAGTGTGTCCTCCAGTACACCATTCTCTAGCCATGCTCCTCTCACTCATCACGTggctcctgggaatttcacacacaacagtctccagggtttacacagaatggtgcaagaacCAAAAAACATCCGGCAAGAAGCAGTTCCATGGGCAGAAACACCTGATGAgtaaggtcagaggagaatgaccagactggttggagttgacaggaagtctacagtgacccaaataatcactctttgcaataatggtgagcagaaaagcatcacagaacacgcaacacatcgaaccttgaagCAGATGCACTACAACTGTggaagaccacgtcaggttccactcctgagGATACAgtaggcacagactcaccgaaactggacagatgaagaccggaaaaagaccaggtgatgtttctCTCATCTTCACCTGTTTAGCTACAATCTCATTGGCTAGCTACACTTCTGTGCTCTGGTTTCCAATGGGAACGCAAGCTTTTAAACACTGTCTCACctcaaaatttatttaaaaaacaaaagtcagTTTGCAGaatttattcaactcctgaacttACAGTTCCTCGgactcagctacatcactttgAGTACATCACTAAACCAGACGTCTTGTGGAACTTTCTGGTAAACTTTCTATCAAGCGTTATCTTTCAAAACCACAATATCAGGACATACGAACCTGCTGCTTAAAGATGGCTACCTACTAATATCTCATCAGATTTACGTTGGTTTTGGGTTTATTACATTCCAGACAGATCAGAAATGTTCACTGTACACGCTATCAGAATCTTACAAAGCTGCGACACAGTGCTGCTGCAAGTCAAAAATTATTTACTACTGAGGCTTTCTTTTAATAACGATCATTTAAGAACAATGAAAAATGCACAATGACAGTATAagcaatatatttataattatttgtattattatgttTTGGAGATCGTTTGGAGTGACATGGAGCAGCGGCGTTAGAAATAAAAGCAGATTTCTGTTTTGAGTTTGTGAATTCAGCCAATTTGTGCAGAAATCTTGGTTTTTTTTGGATCTCAGTGTTTAGGCAGGGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167531 lncRNA upstream 19589 355404 ~ 356798 (+) True G141694
TU167515 lncRNA upstream 66010 298089 ~ 310377 (+) True G141679
TU167511 lncRNA upstream 78450 282417 ~ 297937 (+) False G141675
TU167509 lncRNA upstream 78450 293171 ~ 297937 (+) True G141675
TU167507 lncRNA upstream 94531 281596 ~ 281856 (+) True G141674
TU167552 lncRNA downstream 36147 415274 ~ 502406 (+) True G141711
TU167551 lncRNA downstream 57723 436850 ~ 502406 (+) False G141711
TU167564 lncRNA downstream 98945 478072 ~ 608632 (+) True G141722
TU167576 lncRNA downstream 113784 492911 ~ 493418 (+) True G141726
TU167581 lncRNA downstream 170223 549350 ~ 606268 (+) True G141731
XM_026911543.2 mRNA upstream 46403 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 242980 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 249049 115546 ~ 127338 (+) True fabp10b
XM_026911871.2 mRNA upstream 261451 102820 ~ 114936 (+) False LOC113525374
XM_026911544.2 mRNA downstream 58900 438027 ~ 444448 (+) True LOC113525101
XM_026909968.2 mRNA downstream 1083318 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 1117346 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 1117394 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 1155740 1534867 ~ 1540467 (+) False LOC113523893
TU167477 other upstream 140866 212948 ~ 235521 (+) True G141647
TU167368 other upstream 280327 93086 ~ 96060 (+) True G141566
TU167690 other downstream 361722 740849 ~ 742201 (+) False G141823
TU167699 other downstream 387928 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 488542 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 562894 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 631542 1010669 ~ 1061264 (+) False G141825

Expression Profile