RNA id: XR_004578789.1


Basic Information

Item Value
RNA id XR_004578789.1
length 230
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC117598068
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2649433 ~ 2649912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGACTAACATTTTCCATGAAGAAATTCGGGGATCGACATGATGGCTCATGCTTTAAAAGTTCAAGCTGAAATTCACCAGGTGCCTGAGTATCAGGCGGAAGAACTAGAGGGTATTAGCCTCACTCAGACAGACCCAGATTTTACACGGGGAATTAATCCTGATGAGTTTGCGAGAGGATCGGGAAGCGACAGTCTCGCGGACGATTTGGATTTGATTCTAACAGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168654 lncRNA upstream 8928 2433259 ~ 2640505 (+) True G142436
TU168670 lncRNA upstream 77886 2564492 ~ 2571547 (+) True G142445
TU168621 lncRNA upstream 90102 2544329 ~ 2559331 (+) False LOC113523823
TU168634 lncRNA upstream 93267 2554057 ~ 2556166 (+) False LOC117598105
TU168666 lncRNA upstream 93776 2541250 ~ 2555657 (+) True G142443
TU168682 lncRNA downstream 17146 2667058 ~ 3024410 (+) True G142454
TU168684 lncRNA downstream 41508 2691420 ~ 2692839 (+) False LOC117598057
XR_004578792.1 lncRNA downstream 107814 2757726 ~ 2762429 (+) True LOC117598070
TU168686 lncRNA downstream 140687 2790599 ~ 2791137 (+) True G142458
XR_004578788.1 lncRNA downstream 156480 2806392 ~ 2807615 (+) False LOC117598067
XM_034307641.1 mRNA upstream 90706 2411742 ~ 2558727 (+) False LOC117598105
XM_034307464.1 mRNA downstream 19215 2669127 ~ 2676154 (+) True LOC117598063
XM_034307465.1 mRNA downstream 19228 2669140 ~ 2676154 (+) False LOC117598063
XM_034307450.1 mRNA downstream 37883 2687795 ~ 2692842 (+) True LOC117598057
XM_034307452.1 mRNA downstream 103517 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA downstream 103517 2753429 ~ 2756267 (+) False LOC117598059
TU168662 other upstream 171475 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 293201 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 351727 2296293 ~ 2297706 (+) True LOC117598173
LOC113523831 other downstream 542028 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 547964 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 566065 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 567506 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 569237 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile