RNA id: XR_004578792.1


Basic Information

Item Value
RNA id XR_004578792.1
length 367
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC117598070
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2757726 ~ 2762429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctacccactgcaccactgcgCTGCTCTTTGGGTTTAtatggttaaataaataaaagattatctATGTATTTCATGTTCTCCTAAGCTTCTCTAGAGCAGGTTGGAACTCTTCACCTGCAGTGATCCTGACTGTTAGACCCTGTGACAACATCACACTGTACTGCAACATCTACCAGCACTGATATGGTCTGGTGTTGATGATGTTCCTGAAtcaggtacagagagagagGTGTGGTTAAGGGCATCAGGGAGTGTGCAGCGCTGGACGCCTCTCATTTCTATCTGCTCACTCTCATTCTCATGCTTAACCTCAGTGTCATCTACAAACGAGggtttcttggagcctatcccagggaacttgggacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168658 lncRNA upstream 36878 2456518 ~ 2720848 (+) True G142440
TU168679 lncRNA upstream 56015 2599593 ~ 2701711 (+) True G142451
TU168684 lncRNA upstream 64887 2691420 ~ 2692839 (+) False LOC117598057
TU168651 lncRNA upstream 86261 2401923 ~ 2671465 (+) True G142433
XR_004578789.1 lncRNA upstream 107814 2649433 ~ 2649912 (+) True LOC117598068
TU168686 lncRNA downstream 28170 2790599 ~ 2791137 (+) True G142458
XR_004578788.1 lncRNA downstream 43963 2806392 ~ 2807615 (+) False LOC117598067
XR_004578790.1 lncRNA downstream 61486 2823915 ~ 2832344 (+) False LOC117598069
XR_004578791.1 lncRNA downstream 62195 2824624 ~ 2832344 (+) False LOC117598069
TU168702 lncRNA downstream 94501 2856930 ~ 2993966 (+) True G142469
XM_034307452.1 mRNA upstream 1459 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA upstream 1459 2753429 ~ 2756267 (+) False LOC117598059
XM_034307455.1 mRNA upstream 1459 2753429 ~ 2756267 (+) False LOC117598059
XM_034307453.1 mRNA upstream 1459 2753429 ~ 2756267 (+) False LOC117598059
XM_034307450.1 mRNA upstream 64884 2687795 ~ 2692842 (+) True LOC117598057
XM_034307448.1 mRNA downstream 131058 2893487 ~ 2898257 (+) True LOC117598055
XM_034307445.1 mRNA downstream 251653 3014082 ~ 3032526 (+) False LOC113523823
XM_034307446.1 mRNA downstream 263875 3026304 ~ 3032526 (+) False LOC113523823
XM_026909910.2 mRNA downstream 293194 3055623 ~ 3061337 (+) True LOC113523850
XM_026909916.2 mRNA downstream 355859 3118288 ~ 3123714 (+) True rps18
TU168662 other upstream 279768 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 401494 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 460020 2296293 ~ 2297706 (+) True LOC117598173
LOC113523831 other downstream 429511 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 435447 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 453548 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 454989 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 456720 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile