Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578802.1 |
| length | 1143 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC117598079 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 5610562 ~ 5613308 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU170069 | lncRNA | upstream | 5902 | 5600363 ~ 5604660 (+) | True | G143601 |
| TU170039 | lncRNA | upstream | 118724 | 5491294 ~ 5491838 (+) | True | G143577 |
| TU170031 | lncRNA | upstream | 123334 | 5482618 ~ 5487228 (+) | True | G143569 |
| TU170028 | lncRNA | upstream | 156477 | 5453159 ~ 5454085 (+) | True | G143566 |
| TU170016 | lncRNA | upstream | 184037 | 5425417 ~ 5426525 (+) | True | G143559 |
| TU170093 | lncRNA | downstream | 35786 | 5649094 ~ 5652886 (+) | True | G143622 |
| TU170118 | lncRNA | downstream | 111572 | 5724880 ~ 5727587 (+) | True | G143644 |
| TU170248 | lncRNA | downstream | 297675 | 5910983 ~ 5912741 (+) | True | G143757 |
| TU170250 | lncRNA | downstream | 297749 | 5911057 ~ 5912741 (+) | False | G143757 |
| TU170260 | lncRNA | downstream | 309503 | 5922811 ~ 5923752 (+) | True | G143766 |
| XM_034307132.1 | mRNA | upstream | 27813 | 5565321 ~ 5582749 (+) | False | LOC113547141 |
| XM_034307131.1 | mRNA | upstream | 27813 | 5565416 ~ 5582749 (+) | True | LOC113547141 |
| XM_026947374.2 | mRNA | upstream | 190402 | 5414917 ~ 5420160 (+) | True | LOC113547138 |
| XM_034307199.1 | mRNA | upstream | 704699 | 4902900 ~ 4905863 (+) | True | LOC117597937 |
| XM_026947390.2 | mRNA | upstream | 919949 | 4671050 ~ 4690613 (+) | True | si:dkey-206d17.12 |
| XM_026947312.2 | mRNA | downstream | 127599 | 5740907 ~ 5747940 (+) | True | gpx3 |
| XM_026947344.2 | mRNA | downstream | 225318 | 5838626 ~ 5850058 (+) | True | LOC113547120 |
| XM_034307400.1 | mRNA | downstream | 240922 | 5854230 ~ 5861207 (+) | True | LOC113547110 |
| XM_026947346.2 | mRNA | downstream | 252149 | 5865457 ~ 5903463 (+) | False | n4bp3 |
| XM_026947345.2 | mRNA | downstream | 268538 | 5881846 ~ 5903463 (+) | True | n4bp3 |
| TU169682 | other | upstream | 1105507 | 4484843 ~ 4505055 (+) | False | fhl3b |
| TU169683 | other | upstream | 1105507 | 4484883 ~ 4505055 (+) | False | fhl3b |
| TU168849 | other | upstream | 2148391 | 3397670 ~ 3462171 (+) | False | G142576 |
| TU168853 | other | upstream | 2214495 | 3388253 ~ 3396067 (+) | True | LOC113523845 |
| XR_003402471.1 | other | upstream | 2242224 | 3368205 ~ 3368338 (+) | True | LOC113523858 |
| TU170101 | other | downstream | 127650 | 5740958 ~ 5747944 (+) | False | gpx3 |
| TU170815 | other | downstream | 973903 | 6587211 ~ 6593605 (+) | True | LOC113547098 |
| TU170969 | other | downstream | 1166681 | 6779989 ~ 6798904 (+) | False | G144353 |
| LOC113547145 | other | downstream | 1170208 | 6783516 ~ 6785437 (+) | True | LOC113547145 |
| TU170957 | other | downstream | 1183501 | 6796809 ~ 6870576 (+) | True | G144353 |
