RNA id: XR_004578832.1


Basic Information

Item Value
RNA id XR_004578832.1
length 838
lncRNA type intronic
GC content 0.45
exon number 5
gene id LOC117598110
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2419974 ~ 2429915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAATGTTATCGTAAGGATTAAGTTGTTTCTCTTCATGAATATAAGCCATCCAAGAAAGAAACTTCAAGATGTAAACCCCTCTCTTAGTTCACAAGCAGGCAAAAGTGTTCTACGGTGTTGGTGTCGATGTCGATGGATGCATTAAACATCTGTGAACGGAACCTCAGCCTTCGCGTTGTGACTAAGGGCGGCATACCCAATACGATGCAAATGGAAAAAAGCAGGTCATGATGCCCTGATACTGTCTGGAAAAGCAgAATGAAAGATTCAACAGGTGAACTAATTCCAGTACAGAACCTATAGGATGTTGCGGATGCGCGACTGAACGGATCACTTCCCGAGATGGAATGACCCATCACTACGAAAGACAGAGACAGCGCCAGTGTGTTACAGCGGAGAGTGAGAGGGTGTACAGATTTCTTTCCTGCTGTTCTAAAGAATCACCCACACAGCCAGCTGCCACAGATGATGGAGGAATGAACTCTTCTCCCACTCTGATGATGGTCGTATCCCTCCTCTTATTAGCCAGTCATTTCAGCACAATAACATGACAGGCATACTTCATGTTgattttttccttcattcttcTTATGAGGCAAAATAGTCGGTCAGATTTTGTGAACAGTTCAGCTTGAGGTACAAGAGTGTACTGTTACCAGTTGCTGGTGTTTCTTTTACACTGGGTAACGATTTGGCAGGGAGTAAAGTACTTTCCCTTCCTGAAGTGACCCGTTCACTACAAGTGAAGGTGTCCTTACCCAGCAGTATCCCTAGTGTTCCCTACTTGTCTGCTCACCCGTGTTCTTCATGTGAACAGCTTGAACTTGAACTAGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168637 lncRNA upstream 23723 2391344 ~ 2396251 (+) True G142420
TU168646 lncRNA upstream 47619 2372124 ~ 2372355 (+) True G142429
TU168606 lncRNA upstream 60517 2358799 ~ 2359457 (+) True G142411
TU168603 lncRNA upstream 75869 2335209 ~ 2344105 (+) True LOC117595676
XR_004578869.1 lncRNA upstream 119919 2299176 ~ 2300055 (+) True LOC117598178
TU168635 lncRNA downstream 635 2430550 ~ 2482509 (+) True G142418
TU168612 lncRNA downstream 1230 2431145 ~ 2819770 (+) False LOC113523823
TU168614 lncRNA downstream 1230 2431145 ~ 2819770 (+) False LOC113523823
TU168620 lncRNA downstream 1230 2431145 ~ 2819770 (+) False LOC113523823
TU168654 lncRNA downstream 3344 2433259 ~ 2640505 (+) True G142436
XM_034307638.1 mRNA upstream 13142 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA upstream 13142 2398813 ~ 2406832 (+) False LOC117598105
XM_034307642.1 mRNA upstream 36181 2374715 ~ 2383793 (+) True LOC117598106
XM_034307643.1 mRNA upstream 43063 2374699 ~ 2376911 (+) False LOC117598106
XM_034307527.1 mRNA upstream 61981 2353535 ~ 2357993 (+) False LOC117595676
XM_034307634.1 mRNA downstream 45243 2475158 ~ 2477382 (+) False LOC117598104
XM_034307635.1 mRNA downstream 45243 2475158 ~ 2477382 (+) False LOC117598104
XM_034307645.1 mRNA downstream 120390 2550305 ~ 2552377 (+) True LOC117598108
XM_034307636.1 mRNA downstream 124375 2554290 ~ 2558727 (+) False LOC117598105
XM_034307464.1 mRNA downstream 239212 2669127 ~ 2676154 (+) True LOC117598063
TU168604 other upstream 63742 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 122268 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 122268 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 122268 2296959 ~ 2297706 (+) False LOC117598173
XR_004578868.1 other upstream 131335 2288098 ~ 2288639 (+) False LOC117598174
TU168662 other downstream 45289 2475204 ~ 2477958 (+) True LOC117598104
TU168667 other downstream 129896 2559811 ~ 2808637 (+) True LOC117598067
LOC113523831 other downstream 762025 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 767961 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 786062 3215977 ~ 3216048 (+) True trnac-gca_1

Expression Profile