RNA id: XR_004578837.1


Basic Information

Item Value
RNA id XR_004578837.1
length 4092
lncRNA type inter_gene
GC content 0.42
exon number 8
gene id LOC113530068
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18601539 ~ 18620821 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGCAGCATTTGATTGCCATCTTGTTTATGTGTAATGTGGTCACGTTTGattgatttaaaatgtgtgtgtgtttgtgtgtgcgtgcgtgtgtgtgtgtgtgttttccccttTCAGCAAGGGCTCGCTGCATAGcttCATGGAAATTTAAacgccatctctctctctcgagcaGGAATCTCACAAACCGTAAatatgacaacaaaaaaaaaaaaagcaagaccAAACTCATTTGTCTGACGGCGCTGTTGAGCCATTTTACGCTTTCTGTCTTCGCTACAACTGAAAGTTCGCGAATGGAAATCCCTACCATCAGAAGAACACCGGGTGATGTTGGTTTAATAAATGAAGAGGACACTAGATGAAAGCATGCATGGGAAAGAAGGAGTGCCATGAGGCGCTGGAGGAGCGCTGCGCCGGAGCCGATCAGAGGGGAACCCAGAGGCTGCACAGTTGGGCTGAAAATACAATGTGGCGTCAAGGGGAGCCTGTGCTCCTGCTCGACCTGCACCAAAATTACCCTCAACTAGGCATATCTTTTTGAATCCCACCCGCAGATGGACGCAGCAGTGCAAGTAGTCTGCTTTCCCCGAGTCATTCGAAATGCATCCTTAAGTTTTGTACTCATAAGTCCGCATGACAGTTTTCCCGCCTGCTTGGTTCGTCCAATTCAGTTTGCAGTTAGAAGCTATAGATAATATGGCAATAGGCGGGCTGACTTGGATTACTCTTCCGCCCACGTCATTTTCATTATACACCGCTGcaacagactgtttttttttttcgttgcTATGAACTGAAATACTGCTCTGGTGCTGGCACATATGCATTCACTTTGTATGTATTAGTGTTATTTACAGAGTATCACCAGCAATCACAAAACTGCGTCTGCCACTACTCCTGACAGATTTGTAACTCCAAGTCTGCAGCACACAGACTTCGCTGAAATTTGGCACAAATCTGTCCAAGTGCGTGCTTTAGAGTGAGAATACTTGCGCGTAAGAAACAACAGTTGGTAGACGCCGCTGTCATGATCTATCGCGCCACAGAGCACTATTACACTGTAACAATGTAGCTCGTAAGAGTCGACTTGGATAGCAGATCTCAGGTTTCTACGAGACGTGCAGCGTTTTCTACCCGGGTATCCCTTATCCTAGTTATATTTGTTGAATACCTACCAAGATACATCATCCAAATGAAATTGATTCTGAAATTGGCAAATTGGTGCTCTCAGGAATGTAAACTCGTATTTAGTGAGCACTGTTTGCTGACATGGGAAacgaaaaaaaaccaaaacaaaacgaTGCTGATAACCTTGACCTCAAAGACCATGtggctttctttgttaaacgCACCCAGTCCAGACATGCCAAGATCTTCTTAAATAATGCAATACTGGCGGTGTAATTTTGGTGGCAAAACAGATTTCTCCGAGTCGTGACTGCTATAGTGAGTAATATGGGCGCGTTGGCTGCGTCAGGAGATGCAGTCGCTGTGCGCTGCAGACGGAAGGGGGAGAATCGTGACTGACTGCTGGAGACGTCCGCAGACGAAACGACCACCCAATAAAATCCTCTTAATGGCATCTGGGCAAGATATTTACACATGTTATCTCTCTAGCCCTTTACTCTTTGCGTTGAGCCACCTCAACCCCCCCTTGCACCACCGAAGACATGAGAAGAATATCTGTGGATCTTGGTTTGGGATGAGTTCCgactggcgtgtgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgagagagagaagagagagagagagagagagagagagagagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtataccggGCGGGGAGGGGGGTCCAGATATAGATCGTGACCCTCCCACCTAGTACAGTTTCTTGCATATAGTTCCAAAAAGGGATTGCCAGAGACTTTGTGGTGCATTTTGACAAATGATTACTATGTGGAATATAGGAACAGGAATTCTCTGGGTTTAGAAAAACCTCTGGAAGGAATCTAGACGTACAGATGCCTCAGCGTCTTCTTCCGTGCTGCCCCATGCCCATTGTTCACCTTGGCCTctATGGTGAAACCTGGAGGTCTGAAGATTCACAAAGTCATCTGAGGCACTACATTCAAGTTTCTGCTTTCATCAGCAGTAAATGGAAGTCATTTAAGAAAATCCACAAGAAGATGGATCTGCCTCGTGCAATCTGTTTATCTCGGTTCCATATGTCAAGAGGCCATTTCTGCAGCTTAATCAAGGAACAAGATGACAGAGTCTTAACAGATATTTAAACTTCTGCTTCTAAAAGCTCTGATATGCTTGGATATCTCTAACTGAAATCTTCTTTGCACCATGCTGAACAAAATCCTGTGGTTGTGTATCTGCAGAAAGCTAAAAGTGAGGATATAAGCAGGTATTAAACAATTACAGCCTGATGACCGTCATGAACACGTGCACAGGGATTTGGATAACTGCACTGAAATTCATTTAGGACTGTTCTATACTCGTCCAGGGCAGCTGGTTAATTAAGGACCAATTTGACACCGTCAGGTATTTAAGTCTCTGTCTCTATAGGGCTTGCGTTTGGAGCAGCATGCAGACATTGAGAACATTGCCATTTCCCGTCGTTTCTTGATGCATATGATGTGTgtggtattttaaaaaaataataggaataaaaacaaaaaagcagaataAGGTAATGACCAAGACGTATGCTGATCTAAGCTCTGGAGGATGAAGTAAAACATTGACATTCTGAATTTGGCTTATAGAGcacgactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgtctGTAAGTAGTGTGGCAGGGACAATATTGAGTGGTAGGATGCAGGGTCTCAAACGTTATCCTAGAGGACAATAAGTGTTTTCTGTGCAAAGGTGTTAATGGCTGTGGTAGGACGATGCTTACAAAAATAAGTCTTTGTTGCTGTAGACTAAATGTCATGGCAATACTGAATCTAGAGAATTTATAAGATGTAATCCATGCAAAAGTGGTTCGTTAGACCTGAATACATGGCTATTTTGAGGACTTTTGTCTGAAAGGATAGACAAGAAGTCACAAGTCACGTTTCTGGGTTAATGTTGAGAAGGTCGCTGTCCACTGCAAAGGTGCTGATAACAAAAACCTGCACACAGACATTATATTTCAGTGCGTTCTTGTCAAACTATACGTTAGGTAAATTGTCtataattgttttattgcttactacAGGCTGTAGTGATGTTAAGGTGTGATACAGACACACTGTACGTTGTAGTCCTAACAATGTGCACGACTTAAAATCAATTACATCCTCAGGCATAGTGTCCAAAAAAGAATTTCATCGAGAGGCACGTAGACAATTGCAGAGGTAATGCACAAAAGAGTCAGAAAGCAGGAGAAAGGTGAGAACTGGGAATACATCGATACTGCAGGTGGGGTGAGAGTAGCTCAGGgcgaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtacccTTTGGGTGGAGTATCTGTAAAATACTGAATAAGAATGActttctttaacaaaaaaataagcaaGAGGCAATCTTTGGAACAAAGCCAAGTCTGTAcgtctgaacacacactataatccaCACTGTAATCCAAACCTCAGCTGTAGTATCAGTGTCTCTGACAATATGAGAGGATATTTTgcttaatatatacatatatattaatgtataggCAATATAGCCAATGTACTGATCTATTACATAATATGAGGCTGAAAATTGCGCTGTTCAAACGCTGGAATTGTAAAATGCAATAATTTCTGTATCAGTGTTGCTGTTCTTTGTATCTTACATGTGCAAAGCAGAGGAAATTCTAACACTCCTGTCGTGCAAGTCGTGTAGTCTGTGAGATAATGTCCTGTTTGTTGGGGTGCGTGCATTACAAATTTGGATCCAGAGATATATGctgtattatataatttaagGTTTTGGTTTTAATGTATTTTGGCATAGTGGTATTGTATcatttgtcattatttaatatctttatttcttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178803 lncRNA upstream 50008 18551893 ~ 18552137 (+) True G150958
TU178799 lncRNA upstream 64290 18537261 ~ 18537855 (+) True G150954
TU178797 lncRNA upstream 71437 18530139 ~ 18530708 (+) True G150952
TU178775 lncRNA upstream 158093 18425317 ~ 18444052 (+) False G150932
TU178948 lncRNA downstream 127006 18747827 ~ 18796239 (+) False nfat5a
TU178978 lncRNA downstream 324454 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 334228 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 489022 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 605828 19226649 ~ 19227893 (+) True G151395
XM_026919459.2 mRNA upstream 15453 18579111 ~ 18586692 (+) True api5
XM_034307441.1 mRNA upstream 24779 18568613 ~ 18577366 (+) False prr5l
XM_026919460.2 mRNA upstream 24780 18568613 ~ 18577365 (+) True prr5l
XM_034307440.1 mRNA upstream 24780 18569086 ~ 18577365 (+) False prr5l
XM_026919195.2 mRNA upstream 98270 18491748 ~ 18503875 (+) False brd1b
XM_034307277.1 mRNA downstream 1367 18622188 ~ 18634768 (+) True hsd17b12a
XM_034307276.1 mRNA downstream 15868 18636689 ~ 18645706 (+) False alkbh3
XM_026919132.2 mRNA downstream 15868 18636689 ~ 18645706 (+) False alkbh3
XM_026919133.2 mRNA downstream 15953 18636774 ~ 18645706 (+) False alkbh3
XM_034307274.1 mRNA downstream 15972 18636793 ~ 18645706 (+) False alkbh3
TU178368 other upstream 759610 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 759610 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 759610 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2560898 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2782572 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 54189 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 100774 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 455774 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 500343 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 639803 19260624 ~ 19263893 (+) True G151401

Expression Profile