RNA id: XR_004578841.1


Basic Information

Item Value
RNA id XR_004578841.1
length 582
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id LOC117598138
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 810700 ~ 812196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtggtcactgtAGTGTAACAGAGGTTTTTGTACAATGGTTTCATTAGAATGTATCACTGTGGCTCACTTTCGGTGGAGGAACCAAACTCATCATCACCGGTCCCACGGTGAAGCCCTCCGTGTCtctgctccctccctcctctctgcagctgtctgagggatcggcctcgctgctctgcctgctgtctgCCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCCCAGGTGAAGGACGGGGTTCTGACCAgcgcagaagaacagaagaaggacggttacacacgcagcagcaccctgaccctcagcaaagcactctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGCGTCAATCATCCGGTCACGTTCAGAAAGAGCCAGTGTGAAGCCCAACAGCTCCAAGATACAATTTAACACTGAGCTGCTTACACATCCATCTACAATAGAGTTTCAGTTCtacacaatgctgacatttctgtctttactctcttcactgtcctgttgctcttcctgtagttttgctctgctgaaataaagcttcattttgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167735 lncRNA upstream 58310 749695 ~ 752390 (+) True LOC117598011
XR_004578765.1 lncRNA upstream 58599 750568 ~ 752101 (+) False LOC117598011
XR_004578764.1 lncRNA upstream 68471 740829 ~ 742229 (+) True LOC117598010
TU167692 lncRNA upstream 68499 675674 ~ 742201 (+) True G141823
TU167694 lncRNA upstream 84975 674232 ~ 725725 (+) False G141823
TU167751 lncRNA downstream 6405 818601 ~ 819087 (+) True G141846
TU167752 lncRNA downstream 19089 831285 ~ 846490 (+) True G141847
TU167729 lncRNA downstream 19896 832092 ~ 850961 (+) True G141826
XR_004578851.1 lncRNA downstream 20030 832226 ~ 833728 (+) True LOC117598146
TU167696 lncRNA downstream 34363 846559 ~ 895584 (+) False G141824
XM_026911544.2 mRNA upstream 366252 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 480716 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 677293 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 683362 115546 ~ 127338 (+) True fabp10b
XM_026911870.2 mRNA upstream 695765 102820 ~ 114935 (+) True LOC113525374
XM_026909968.2 mRNA downstream 650249 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 684277 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 684325 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 722671 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 725963 1538159 ~ 1540467 (+) True LOC113523893
TU167690 other upstream 68499 740849 ~ 742201 (+) False G141823
TU167477 other upstream 575179 212948 ~ 235521 (+) True G141647
TU167368 other upstream 714640 93086 ~ 96060 (+) True G141566
LOC117598023 other downstream 55473 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 129825 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 198473 1010669 ~ 1061264 (+) False G141825
LOC117598132 other downstream 212928 1025124 ~ 1025991 (+) True LOC117598132
LOC117598117 other downstream 214791 1026987 ~ 1081479 (+) True LOC117598117

Expression Profile