RNA id: XR_004578857.1


Basic Information

Item Value
RNA id XR_004578857.1
length 740
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC117598166
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6813294 ~ 6815936 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGCCTGTAGCAGCTCGCTAACTTTTtaattactgtttgtgtggcaGTAACGATTTGCTTGTTGCATCCTAGATTGTCTTTTCATCTGTGCGCGTGTCTCCTTCGGTTACTTCAGTAGTGGATTTGATGACTGCCCTCCTTTCAGGTGTGTGAGTTGAAGCTGTTTTGTAGCAAACAGATCGTCTAGCTTCGCTTGGGGCTTGACAACTTGGCGGGTTGGTTTGAGTAATGTGCAGTTCCCTGTACTTCAATTTAGCAGCGGGGTATATGAAGGCTGTGTATCCTGGCCTGTGAACGgattataaagcacatttatctTCGTTGGAGCTGGGGTCCCACGGGTGAAGGATCTtttgtggtggtggtgctgcTTCAACGTTTGCCGTGGGACACTTTTTggagtgtttggATGCACTGACTCAACAAATGGGAGCAGAAGCAGTTTCGGAGTACGCATATCCAAATGCTGTCCAGAAATGGCTCTGATACACTCCAGATCGTGCGGGTGGGACTGGACGACAGACAGCTGCACCGGTTCCTCCAGTGTCTCTGACAACCAActgattcttttttaaaatggttaaacCTGTTGTAGTGCATTTGTTGTCCCTTTTGTAAAcattctgaaaaataaagaatttataGACATGCTTATTGAAAttgctgttatttatatatttcagatttttctcCTGGCTGTATATAAAGTAGGATTAGTTTTCACAGTACTGGGGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170834 lncRNA upstream 129660 6628351 ~ 6684107 (+) True G144256
TU170785 lncRNA upstream 268851 6544372 ~ 6544916 (+) True G144221
XR_003404779.2 lncRNA upstream 385333 6422136 ~ 6428434 (+) True LOC113547099
TU170524 lncRNA upstream 455847 6356317 ~ 6357920 (+) True G143987
TU170347 lncRNA upstream 829389 5978102 ~ 5984378 (+) True G143832
TU170983 lncRNA downstream 8465 6824401 ~ 6828003 (+) True G144361
TU170984 lncRNA downstream 8465 6824401 ~ 6911988 (+) False G144361
TU170973 lncRNA downstream 52478 6868414 ~ 6908667 (+) False G144353
XR_004578856.1 lncRNA downstream 55196 6871132 ~ 6874093 (+) True LOC117598165
TU170990 lncRNA downstream 56883 6872819 ~ 6899792 (+) False LOC117598165
XM_026947362.2 mRNA upstream 79853 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 79853 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 133598 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 134441 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 220207 6587367 ~ 6593560 (+) False LOC113547098
XM_034307653.1 mRNA downstream 437384 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 437385 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 437385 7253321 ~ 7264696 (+) False LOC113529730
XM_026918781.2 mRNA downstream 566142 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 573563 7389499 ~ 7400424 (+) False LOC113529540
TU170969 other upstream 14863 6779989 ~ 6798904 (+) False G144353
LOC117598156 other upstream 14863 6796972 ~ 6798904 (+) True LOC117598156
LOC113547145 other upstream 28330 6783516 ~ 6785437 (+) True LOC113547145
TU170815 other upstream 220162 6587211 ~ 6593605 (+) True LOC113547098
TU170101 other upstream 1065823 5740958 ~ 5747944 (+) False gpx3
LOC113529732 other downstream 14656 6830592 ~ 6834449 (+) True LOC113529732
LOC117598033 other downstream 21119 6837055 ~ 6839420 (+) True LOC117598033
TU170974 other downstream 21288 6837224 ~ 6843968 (+) False G144353
TU170947 other downstream 21868 6837804 ~ 6856856 (+) False G144353
LOC117598034 other downstream 26001 6841937 ~ 6843964 (+) True LOC117598034

Expression Profile