Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578858.1 |
| length | 1203 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC117598166 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 6813294 ~ 6815936 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU170834 | lncRNA | upstream | 129187 | 6628351 ~ 6684107 (+) | True | G144256 |
| TU170785 | lncRNA | upstream | 268378 | 6544372 ~ 6544916 (+) | True | G144221 |
| XR_003404779.2 | lncRNA | upstream | 384860 | 6422136 ~ 6428434 (+) | True | LOC113547099 |
| TU170524 | lncRNA | upstream | 455374 | 6356317 ~ 6357920 (+) | True | G143987 |
| TU170347 | lncRNA | upstream | 828916 | 5978102 ~ 5984378 (+) | True | G143832 |
| TU170983 | lncRNA | downstream | 9563 | 6824401 ~ 6828003 (+) | True | G144361 |
| TU170984 | lncRNA | downstream | 9563 | 6824401 ~ 6911988 (+) | False | G144361 |
| TU170973 | lncRNA | downstream | 53576 | 6868414 ~ 6908667 (+) | False | G144353 |
| XR_004578856.1 | lncRNA | downstream | 56294 | 6871132 ~ 6874093 (+) | True | LOC117598165 |
| TU170990 | lncRNA | downstream | 57981 | 6872819 ~ 6899792 (+) | False | LOC117598165 |
| XM_026947362.2 | mRNA | upstream | 79380 | 6692793 ~ 6733914 (+) | False | LOC113547131 |
| XM_026947363.2 | mRNA | upstream | 79380 | 6698312 ~ 6733914 (+) | True | LOC113547131 |
| XM_034307439.1 | mRNA | upstream | 133125 | 6679484 ~ 6680169 (+) | True | LOC117598051 |
| XM_026947355.2 | mRNA | upstream | 133968 | 6605821 ~ 6679326 (+) | True | LOC113547127 |
| XM_026947313.2 | mRNA | upstream | 219734 | 6587367 ~ 6593560 (+) | False | LOC113547098 |
| XM_034307653.1 | mRNA | downstream | 438482 | 7253320 ~ 7264696 (+) | False | LOC113529730 |
| XM_034307652.1 | mRNA | downstream | 438483 | 7253321 ~ 7264696 (+) | True | LOC113529730 |
| XM_034307651.1 | mRNA | downstream | 438483 | 7253321 ~ 7264696 (+) | False | LOC113529730 |
| XM_026918781.2 | mRNA | downstream | 567240 | 7382078 ~ 7400425 (+) | True | LOC113529540 |
| XM_034307142.1 | mRNA | downstream | 574661 | 7389499 ~ 7400424 (+) | False | LOC113529540 |
| TU170969 | other | upstream | 14390 | 6779989 ~ 6798904 (+) | False | G144353 |
| LOC117598156 | other | upstream | 14390 | 6796972 ~ 6798904 (+) | True | LOC117598156 |
| LOC113547145 | other | upstream | 27857 | 6783516 ~ 6785437 (+) | True | LOC113547145 |
| TU170815 | other | upstream | 219689 | 6587211 ~ 6593605 (+) | True | LOC113547098 |
| TU170101 | other | upstream | 1065350 | 5740958 ~ 5747944 (+) | False | gpx3 |
| LOC113529732 | other | downstream | 15754 | 6830592 ~ 6834449 (+) | True | LOC113529732 |
| LOC117598033 | other | downstream | 22217 | 6837055 ~ 6839420 (+) | True | LOC117598033 |
| TU170974 | other | downstream | 22386 | 6837224 ~ 6843968 (+) | False | G144353 |
| TU170947 | other | downstream | 22966 | 6837804 ~ 6856856 (+) | False | G144353 |
| LOC117598034 | other | downstream | 27099 | 6841937 ~ 6843964 (+) | True | LOC117598034 |
