Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578860.1 |
| length | 464 |
| lncRNA type | inter_gene |
| GC content | 0.55 |
| exon number | 2 |
| gene id | LOC117598168 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 6876226 ~ 6877268 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578856.1 | lncRNA | upstream | 2133 | 6871132 ~ 6874093 (+) | True | LOC117598165 |
| TU170960 | lncRNA | upstream | 46160 | 6783338 ~ 6830066 (+) | False | G144353 |
| TU170983 | lncRNA | upstream | 48223 | 6824401 ~ 6828003 (+) | True | G144361 |
| TU170981 | lncRNA | upstream | 49318 | 6807971 ~ 6826908 (+) | True | G144359 |
| XR_004578857.1 | lncRNA | upstream | 60290 | 6813767 ~ 6815936 (+) | False | LOC117598166 |
| TU171008 | lncRNA | downstream | 55312 | 6932580 ~ 6933301 (+) | True | G144382 |
| TU171002 | lncRNA | downstream | 63433 | 6940701 ~ 6942295 (+) | True | G144376 |
| TU171012 | lncRNA | downstream | 73824 | 6951092 ~ 6951422 (+) | True | trnaw-cca_10 |
| TU171074 | lncRNA | downstream | 80369 | 6957637 ~ 6958164 (+) | True | G144442 |
| TU171076 | lncRNA | downstream | 81332 | 6958600 ~ 6961938 (+) | True | G144444 |
| XM_026947362.2 | mRNA | upstream | 142312 | 6692793 ~ 6733914 (+) | False | LOC113547131 |
| XM_026947363.2 | mRNA | upstream | 142312 | 6698312 ~ 6733914 (+) | True | LOC113547131 |
| XM_034307439.1 | mRNA | upstream | 196057 | 6679484 ~ 6680169 (+) | True | LOC117598051 |
| XM_026947355.2 | mRNA | upstream | 196900 | 6605821 ~ 6679326 (+) | True | LOC113547127 |
| XM_026947313.2 | mRNA | upstream | 282666 | 6587367 ~ 6593560 (+) | False | LOC113547098 |
| XM_034307653.1 | mRNA | downstream | 376052 | 7253320 ~ 7264696 (+) | False | LOC113529730 |
| XM_034307652.1 | mRNA | downstream | 376053 | 7253321 ~ 7264696 (+) | True | LOC113529730 |
| XM_034307651.1 | mRNA | downstream | 376053 | 7253321 ~ 7264696 (+) | False | LOC113529730 |
| XM_026918781.2 | mRNA | downstream | 504810 | 7382078 ~ 7400425 (+) | True | LOC113529540 |
| XM_034307142.1 | mRNA | downstream | 512231 | 7389499 ~ 7400424 (+) | False | LOC113529540 |
| TU170968 | other | upstream | 5650 | 6862707 ~ 6870576 (+) | False | G144353 |
| LOC117598164 | other | upstream | 5723 | 6869259 ~ 6870503 (+) | True | LOC117598164 |
| TU170947 | other | upstream | 19370 | 6837804 ~ 6856856 (+) | False | G144353 |
| LOC113529731 | other | downstream | 3389 | 6880657 ~ 6882164 (+) | True | LOC113529731 |
| TU170951 | other | downstream | 17308 | 6894576 ~ 6908667 (+) | False | G144353 |
| TU170948 | other | downstream | 17837 | 6895105 ~ 6919661 (+) | False | G144353 |
| TU170958 | other | downstream | 29285 | 6906553 ~ 6908667 (+) | False | G144353 |
| LOC117598150 | other | downstream | 29921 | 6907189 ~ 6908576 (+) | True | LOC117598150 |
