RNA id: XR_004578871.1


Basic Information

Item Value
RNA id XR_004578871.1
length 210
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC117598179
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2279079 ~ 2279887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGTAGAGCAGCAGCATCAGTACACgagtgaacatgaacatgatctCGATTACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTGGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578679.1 lncRNA upstream 52680 2220567 ~ 2226796 (+) True LOC113545551
TU168530 lncRNA upstream 52697 2220676 ~ 2226779 (+) False LOC113545551
TU168532 lncRNA upstream 52697 2220676 ~ 2226779 (+) False LOC113545551
TU168455 lncRNA upstream 133403 2069238 ~ 2146073 (+) False LOC113545687
TU168467 lncRNA upstream 154080 2084785 ~ 2125396 (+) True G142305
TU168578 lncRNA downstream 473 2280360 ~ 2286141 (+) True G142391
TU168565 lncRNA downstream 19097 2298984 ~ 2301918 (+) True G142385
XR_004578869.1 lncRNA downstream 19289 2299176 ~ 2300055 (+) True LOC117598178
TU168603 lncRNA downstream 55322 2335209 ~ 2344105 (+) True LOC117595676
TU168606 lncRNA downstream 78912 2358799 ~ 2359457 (+) True G142411
XM_034307694.1 mRNA upstream 1480 2276999 ~ 2277996 (+) True LOC117598177
XM_034307693.1 mRNA upstream 4713 2273591 ~ 2274763 (+) True LOC117598176
XM_034307147.1 mRNA upstream 7890 2270059 ~ 2271586 (+) False LOC117597926
XM_034307146.1 mRNA upstream 7890 2270469 ~ 2271586 (+) False LOC117597926
XM_034307393.1 mRNA upstream 20002 2257540 ~ 2259474 (+) True LOC117598027
XM_034307690.1 mRNA downstream 8211 2288098 ~ 2291206 (+) False LOC117598174
XM_034307689.1 mRNA downstream 9790 2289677 ~ 2291206 (+) True LOC117598174
XM_034307688.1 mRNA downstream 10366 2290253 ~ 2291206 (+) False LOC117598174
XM_034307691.1 mRNA downstream 13502 2293389 ~ 2294516 (+) False LOC117598175
XM_034307692.1 mRNA downstream 13731 2293618 ~ 2294516 (+) True LOC117598175
XR_004578666.1 other upstream 7890 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other upstream 7890 2270450 ~ 2271586 (+) False LOC117597926
TU168470 other upstream 163484 2115040 ~ 2115992 (+) False LOC113545687
TU168103 other upstream 658815 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 666140 1611511 ~ 1613336 (+) True G142093
XR_004578868.1 other downstream 8211 2288098 ~ 2288639 (+) False LOC117598174
XR_004578865.1 other downstream 16406 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other downstream 16746 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other downstream 17072 2296959 ~ 2297706 (+) False LOC117598173
TU168604 other downstream 59562 2339449 ~ 2356232 (+) False LOC117595676