Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578875.1 |
| length | 987 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117598182 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 600873 ~ 608245 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU167588 | lncRNA | upstream | 10509 | 588877 ~ 590364 (+) | True | G141738 |
| TU167552 | lncRNA | upstream | 98467 | 415274 ~ 502406 (+) | True | G141711 |
| TU167551 | lncRNA | upstream | 98467 | 436850 ~ 502406 (+) | False | G141711 |
| TU167576 | lncRNA | upstream | 107455 | 492911 ~ 493418 (+) | True | G141726 |
| TU167523 | lncRNA | upstream | 155374 | 344269 ~ 445499 (+) | True | G141687 |
| TU167694 | lncRNA | downstream | 65987 | 674232 ~ 725725 (+) | False | G141823 |
| TU167692 | lncRNA | downstream | 67429 | 675674 ~ 742201 (+) | True | G141823 |
| XR_004578676.1 | lncRNA | downstream | 67579 | 675824 ~ 677329 (+) | True | LOC117597935 |
| XR_004578815.1 | lncRNA | downstream | 116314 | 724559 ~ 725725 (+) | True | LOC113525695 |
| XR_004578764.1 | lncRNA | downstream | 132584 | 740829 ~ 742229 (+) | True | LOC117598010 |
| XM_026911544.2 | mRNA | upstream | 156425 | 438027 ~ 444448 (+) | True | LOC113525101 |
| XM_026911543.2 | mRNA | upstream | 270889 | 324146 ~ 329984 (+) | True | LOC113525100 |
| XM_026911879.2 | mRNA | upstream | 467466 | 127708 ~ 133407 (+) | True | LOC113525382 |
| XM_034307532.1 | mRNA | upstream | 473535 | 115546 ~ 127338 (+) | True | fabp10b |
| XM_026911870.2 | mRNA | upstream | 485938 | 102820 ~ 114935 (+) | True | LOC113525374 |
| XM_026909968.2 | mRNA | downstream | 854200 | 1462445 ~ 1473080 (+) | True | LOC113523903 |
| XM_026909931.2 | mRNA | downstream | 888228 | 1496473 ~ 1505004 (+) | False | LOC113523877 |
| XM_026909932.2 | mRNA | downstream | 888276 | 1496521 ~ 1505004 (+) | True | LOC113523877 |
| XM_026909950.2 | mRNA | downstream | 926622 | 1534867 ~ 1540467 (+) | False | LOC113523893 |
| XM_034307151.1 | mRNA | downstream | 929914 | 1538159 ~ 1540467 (+) | True | LOC113523893 |
| TU167477 | other | upstream | 365352 | 212948 ~ 235521 (+) | True | G141647 |
| TU167368 | other | upstream | 504813 | 93086 ~ 96060 (+) | True | G141566 |
| TU167690 | other | downstream | 132604 | 740849 ~ 742201 (+) | False | G141823 |
| TU167699 | other | downstream | 158810 | 767055 ~ 812185 (+) | True | G141824 |
| LOC117598023 | other | downstream | 259424 | 867669 ~ 869091 (+) | True | LOC117598023 |
| TU167732 | other | downstream | 333776 | 942021 ~ 979635 (+) | True | LOC117598144 |
| TU167711 | other | downstream | 402424 | 1010669 ~ 1061264 (+) | False | G141825 |
