RNA id: trnaa-agc_4


Basic Information

Item Value
RNA id trnaa-agc_4
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnaa-agc_4
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7611770 ~ 7611842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171371 lncRNA upstream 33393 7578128 ~ 7578377 (+) True G144665
TU171367 lncRNA upstream 34982 7576060 ~ 7576788 (+) True G144661
TU171240 lncRNA upstream 36279 7575108 ~ 7575491 (+) True G144568
TU171231 lncRNA upstream 163239 7447870 ~ 7448531 (+) False gabra6a
TU171170 lncRNA upstream 190950 7418761 ~ 7420820 (+) True G144523
TU171439 lncRNA downstream 73906 7685748 ~ 7688153 (+) True G144715
TU171450 lncRNA downstream 92239 7704081 ~ 7704763 (+) True G144726
TU171516 lncRNA downstream 403818 8015660 ~ 8018082 (+) True G144782
TU171518 lncRNA downstream 403818 8015660 ~ 8017911 (+) False G144782
TU171648 lncRNA downstream 431253 8043095 ~ 8043297 (+) True G144891
XM_034307125.1 mRNA upstream 37541 7536335 ~ 7574229 (+) False atp10b
XM_026918736.2 mRNA upstream 37541 7537474 ~ 7574229 (+) True atp10b
XM_026919243.2 mRNA upstream 86420 7467772 ~ 7525350 (+) True gabrb2a
XM_026919245.2 mRNA upstream 87856 7467772 ~ 7523914 (+) False gabrb2a
XM_026919624.2 mRNA upstream 145218 7447880 ~ 7466552 (+) True gabra6a
XM_026919168.2 mRNA downstream 34486 7646328 ~ 7672282 (+) False atp7a
XM_026919167.2 mRNA downstream 34502 7646344 ~ 7672282 (+) True atp7a
XM_026918884.2 mRNA downstream 62699 7674541 ~ 7678733 (+) True sowahab
XM_026919694.2 mRNA downstream 68744 7680586 ~ 7685537 (+) True gdf9
XM_034307405.1 mRNA downstream 177133 7788975 ~ 7797755 (+) True LOC113529727
trnaa-agc_3 other upstream 2657 7609041 ~ 7609113 (+) True trnaa-agc_3
trnag-ccc_3 other upstream 386222 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaw-cca_12 other upstream 655254 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 658897 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 660627 6951072 ~ 6951143 (+) False trnaw-cca_10
trnaa-agc_5 other downstream 2663 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 8095 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_7 other downstream 22656 7634498 ~ 7634570 (+) True trnaa-agc_7
trnaa-agc_8 other downstream 427757 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_10 other downstream 430393 8042235 ~ 8042307 (+) True trnaa-agc_10