RNA id: trnaa-agc_7


Basic Information

Item Value
RNA id trnaa-agc_7
length 73
RNA type tRNA
GC content 0.58
exon number 1
gene id trnaa-agc_7
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7634498 ~ 7634570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171371 lncRNA upstream 56121 7578128 ~ 7578377 (+) True G144665
TU171367 lncRNA upstream 57710 7576060 ~ 7576788 (+) True G144661
TU171240 lncRNA upstream 59007 7575108 ~ 7575491 (+) True G144568
TU171231 lncRNA upstream 185967 7447870 ~ 7448531 (+) False gabra6a
TU171170 lncRNA upstream 213678 7418761 ~ 7420820 (+) True G144523
TU171439 lncRNA downstream 51178 7685748 ~ 7688153 (+) True G144715
TU171450 lncRNA downstream 69511 7704081 ~ 7704763 (+) True G144726
TU171516 lncRNA downstream 381090 8015660 ~ 8018082 (+) True G144782
TU171518 lncRNA downstream 381090 8015660 ~ 8017911 (+) False G144782
TU171648 lncRNA downstream 408525 8043095 ~ 8043297 (+) True G144891
XM_034307125.1 mRNA upstream 60269 7536335 ~ 7574229 (+) False atp10b
XM_026918736.2 mRNA upstream 60269 7537474 ~ 7574229 (+) True atp10b
XM_026919243.2 mRNA upstream 109148 7467772 ~ 7525350 (+) True gabrb2a
XM_026919245.2 mRNA upstream 110584 7467772 ~ 7523914 (+) False gabrb2a
XM_026919624.2 mRNA upstream 167946 7447880 ~ 7466552 (+) True gabra6a
XM_026919168.2 mRNA downstream 11758 7646328 ~ 7672282 (+) False atp7a
XM_026919167.2 mRNA downstream 11774 7646344 ~ 7672282 (+) True atp7a
XM_026918884.2 mRNA downstream 39971 7674541 ~ 7678733 (+) True sowahab
XM_026919694.2 mRNA downstream 46016 7680586 ~ 7685537 (+) True gdf9
XM_034307405.1 mRNA downstream 154405 7788975 ~ 7797755 (+) True LOC113529727
trnaa-agc_6 other upstream 14489 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_5 other upstream 19921 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_4 other upstream 22656 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_3 other upstream 25385 7609041 ~ 7609113 (+) True trnaa-agc_3
trnag-ccc_3 other upstream 408950 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaa-agc_8 other downstream 405029 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_10 other downstream 407665 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_11 other downstream 409768 8044338 ~ 8044410 (+) True trnaa-agc_11
TU172076 other downstream 1206906 8841476 ~ 8842266 (+) True G145233
TU173183 other downstream 2909305 10543875 ~ 10547792 (+) False si:ch73-233f7.1