RNA id: trnac-gca_1


Basic Information

Item Value
RNA id trnac-gca_1
length 72
RNA type tRNA
GC content 0.57
exon number 1
gene id trnac-gca_1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3215977 ~ 3216048 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCTGGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168783 lncRNA upstream 191 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 200 3211363 ~ 3215777 (+) True LOC117598172
TU168768 lncRNA upstream 16646 3192111 ~ 3199331 (+) False G142521
TU168769 lncRNA upstream 16646 3197708 ~ 3199331 (+) False G142521
TU168772 lncRNA upstream 22615 3159446 ~ 3193362 (+) False G142521
TU168782 lncRNA downstream 13258 3229306 ~ 3230300 (+) True G142524
TU168808 lncRNA downstream 67080 3283128 ~ 3352119 (+) True G142545
TU168817 lncRNA downstream 96713 3312761 ~ 3321168 (+) True G142553
TU168839 lncRNA downstream 163673 3379721 ~ 3381739 (+) True G142573
TU168855 lncRNA downstream 174857 3390905 ~ 3391147 (+) True G142580
XM_034307287.1 mRNA upstream 62131 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 92263 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 154640 3055623 ~ 3061337 (+) True LOC113523850
XM_034307445.1 mRNA upstream 183451 3014082 ~ 3032526 (+) False LOC113523823
XM_026909884.2 mRNA downstream 77751 3293799 ~ 3308324 (+) True cratb
XM_034307426.1 mRNA downstream 130524 3346572 ~ 3356643 (+) True ppt2b
XM_026909905.2 mRNA downstream 146352 3362400 ~ 3368547 (+) True rps5
XM_034307220.1 mRNA downstream 168132 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 172215 3388263 ~ 3396036 (+) False LOC113523845
LOC117598030 other upstream 16653 3197876 ~ 3199324 (+) True LOC117598030
LOC113523831 other upstream 22609 3191940 ~ 3193368 (+) True LOC113523831
TU168667 other upstream 407340 2559811 ~ 2808637 (+) True LOC117598067
TU168662 other upstream 738019 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 859745 2339449 ~ 2356232 (+) False LOC117595676
trnac-gca_2 other downstream 1370 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 3101 3219149 ~ 3219220 (+) True trnac-gca_3
LOC117597933 other downstream 32476 3248524 ~ 3249755 (+) True LOC117597933
LOC113523833 other downstream 35337 3251385 ~ 3251999 (+) True LOC113523833
trnac-gca_4 other downstream 36979 3253027 ~ 3253098 (+) True trnac-gca_4