RNA id: trnac-gca_10


Basic Information

Item Value
RNA id trnac-gca_10
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnac-gca_10
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3259808 ~ 3259879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCAGTTCAAATCTGGGTGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168782 lncRNA upstream 29508 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 44022 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 44031 3211363 ~ 3215777 (+) True LOC117598172
TU168768 lncRNA upstream 60477 3192111 ~ 3199331 (+) False G142521
TU168808 lncRNA downstream 23249 3283128 ~ 3352119 (+) True G142545
TU168817 lncRNA downstream 52882 3312761 ~ 3321168 (+) True G142553
TU168839 lncRNA downstream 119842 3379721 ~ 3381739 (+) True G142573
TU168855 lncRNA downstream 131026 3390905 ~ 3391147 (+) True G142580
TU168854 lncRNA downstream 133893 3393772 ~ 3396067 (+) False LOC113523845
XM_034307287.1 mRNA upstream 105962 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 136094 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 198471 3055623 ~ 3061337 (+) True LOC113523850
XM_034307445.1 mRNA upstream 227282 3014082 ~ 3032526 (+) False LOC113523823
XM_026909884.2 mRNA downstream 33920 3293799 ~ 3308324 (+) True cratb
XM_034307426.1 mRNA downstream 86693 3346572 ~ 3356643 (+) True ppt2b
XM_026909905.2 mRNA downstream 102521 3362400 ~ 3368547 (+) True rps5
XM_034307220.1 mRNA downstream 124301 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 128384 3388263 ~ 3396036 (+) False LOC113523845
trnac-gca_9 other upstream 547 3259190 ~ 3259261 (+) True trnac-gca_9
trnac-gca_8 other upstream 2293 3257444 ~ 3257515 (+) True trnac-gca_8
trnac-gca_7 other upstream 3227 3256510 ~ 3256581 (+) True trnac-gca_7
trnac-gca_6 other upstream 4469 3255268 ~ 3255339 (+) True trnac-gca_6
trnac-gca_5 other upstream 5185 3254552 ~ 3254623 (+) True trnac-gca_5
trnac-gca_11 other downstream 462 3260341 ~ 3260412 (+) True trnac-gca_11
trnac-gca_12 other downstream 995 3260874 ~ 3260945 (+) True trnac-gca_12
XR_003402470.1 other downstream 104336 3364215 ~ 3364348 (+) True LOC113523857
XR_003402472.2 other downstream 106246 3366125 ~ 3366258 (+) True LOC113523859
XR_003402471.1 other downstream 108326 3368205 ~ 3368338 (+) True LOC113523858