RNA id: trnac-gca_5


Basic Information

Item Value
RNA id trnac-gca_5
length 72
RNA type tRNA
GC content 0.51
exon number 1
gene id trnac-gca_5
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3254552 ~ 3254623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGTATAGCTCCGTGGTAGAGCGTTTGACTGCAAATCAAGAGGTCTCTGGTTCAAATCAAGGTGCTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168782 lncRNA upstream 24252 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 38766 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 38775 3211363 ~ 3215777 (+) True LOC117598172
TU168768 lncRNA upstream 55221 3192111 ~ 3199331 (+) False G142521
TU168808 lncRNA downstream 28505 3283128 ~ 3352119 (+) True G142545
TU168817 lncRNA downstream 58138 3312761 ~ 3321168 (+) True G142553
TU168839 lncRNA downstream 125098 3379721 ~ 3381739 (+) True G142573
TU168855 lncRNA downstream 136282 3390905 ~ 3391147 (+) True G142580
TU168854 lncRNA downstream 139149 3393772 ~ 3396067 (+) False LOC113523845
XM_034307287.1 mRNA upstream 100706 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 130838 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 193215 3055623 ~ 3061337 (+) True LOC113523850
XM_034307445.1 mRNA upstream 222026 3014082 ~ 3032526 (+) False LOC113523823
XM_026909884.2 mRNA downstream 39176 3293799 ~ 3308324 (+) True cratb
XM_034307426.1 mRNA downstream 91949 3346572 ~ 3356643 (+) True ppt2b
XM_026909905.2 mRNA downstream 107777 3362400 ~ 3368547 (+) True rps5
XM_034307220.1 mRNA downstream 129557 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 133640 3388263 ~ 3396036 (+) False LOC113523845
trnac-gca_4 other upstream 1454 3253027 ~ 3253098 (+) True trnac-gca_4
LOC113523833 other upstream 2553 3251385 ~ 3251999 (+) True LOC113523833
LOC117597933 other upstream 4797 3248524 ~ 3249755 (+) True LOC117597933
trnac-gca_3 other upstream 35332 3219149 ~ 3219220 (+) True trnac-gca_3
trnac-gca_2 other upstream 37063 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_6 other downstream 645 3255268 ~ 3255339 (+) True trnac-gca_6
trnac-gca_7 other downstream 1887 3256510 ~ 3256581 (+) True trnac-gca_7
trnac-gca_8 other downstream 2821 3257444 ~ 3257515 (+) True trnac-gca_8
trnac-gca_9 other downstream 4567 3259190 ~ 3259261 (+) True trnac-gca_9
trnac-gca_10 other downstream 5185 3259808 ~ 3259879 (+) True trnac-gca_10