RNA id: trnav-aac_18


Basic Information

Item Value
RNA id trnav-aac_18
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnav-aac_18
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16041175 ~ 16041247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTCCgtagtgtagtggttatcacGTTCGCCTAACACGCGAAAGGTCCCTGGTTCGAAACCGGGCGGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177011 lncRNA upstream 13156 16027607 ~ 16028019 (+) True G149428
TU177010 lncRNA upstream 14663 16024844 ~ 16026512 (+) True G149427
TU176828 lncRNA upstream 222807 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 286263 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 316084 15721348 ~ 15725091 (+) True svip
TU177169 lncRNA downstream 213437 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 287009 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 297343 16338590 ~ 16341963 (+) True LOC117597940
TU177372 lncRNA downstream 398459 16439706 ~ 16440054 (+) True G149722
TU177373 lncRNA downstream 404792 16446039 ~ 16449140 (+) True G149723
XM_026919794.2 mRNA upstream 27020 16009837 ~ 16014155 (+) True neil1
XM_026919523.2 mRNA upstream 32352 16005670 ~ 16008823 (+) False commd4
XM_026919524.2 mRNA upstream 32352 16005686 ~ 16008823 (+) True commd4
XM_026919989.2 mRNA upstream 60930 15968543 ~ 15980245 (+) True stra6
XM_026919885.2 mRNA upstream 135846 15897676 ~ 15905329 (+) True LOC113530122
XM_026918866.2 mRNA downstream 4328 16045575 ~ 16048154 (+) True si:dkeyp-73b11.8
XM_026919968.2 mRNA downstream 7837 16049084 ~ 16060168 (+) False usp3
XM_026919969.2 mRNA downstream 8144 16049391 ~ 16060168 (+) True usp3
XM_026918890.2 mRNA downstream 19841 16061088 ~ 16066983 (+) True fbxl22
XM_034307478.1 mRNA downstream 51825 16093072 ~ 16106147 (+) True LOC113529940
XR_004578669.1 other upstream 218584 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 221019 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 221602 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2220513 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 2265992 13761334 ~ 13775183 (+) False ces2b
TU178368 other downstream 1792990 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1792990 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1792990 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2633763 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2680348 18721595 ~ 18724686 (+) True urahb