RNA id: TU340603


Basic Information

Item Value
RNA id TU340603
length 726
RNA type TUCP
GC content 0.53
exon number 3
gene id G287625
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 806306 ~ 897362 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTATTGAGCAGCTTGACTTCGAGAGAGCAGCATCATGTCTGGCAGAGGCAAGGGCGGAAAGGGGCTCGGCAAAGGAGGCGCCAAGCGTCACCGTAAAGTTCTTCGCGATAACATCCAGGGAATCACCAAGCCGGCTATTCGCCGTCTGGCTCGCCGTGGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACGACGCGAACACAACGGCTCTTTTAAGAGCCACCCAAACATCCAGAAAAAGAGCTGTTCctcgtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttacacacgtAACACATAAGTAGAAGATAATTTATATATGAACACAAAATCATAAACAATCTagttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340609 lncRNA upstream 3782 762431 ~ 802524 (+) True G287627
XR_004580133.1 lncRNA upstream 337902 454598 ~ 468404 (+) True LOC113525268
XR_004580129.1 lncRNA upstream 415104 388696 ~ 391202 (+) False LOC117599767
XR_004580134.1 lncRNA downstream 94253 926233 ~ 926639 (+) True LOC117599769
TU340884 lncRNA downstream 158230 990210 ~ 990435 (+) True G287814
TU340887 lncRNA downstream 173687 1005667 ~ 1007006 (+) True G287817
TU340963 lncRNA downstream 352103 1184083 ~ 1184363 (+) True G287872
TU340985 lncRNA downstream 409881 1241861 ~ 1242067 (+) True G287891
XM_034313888.1 mRNA upstream 288862 511056 ~ 517444 (+) True LOC117599791
XM_034313772.1 mRNA upstream 400360 405152 ~ 405946 (+) True LOC117599754
XM_034313883.1 mRNA upstream 596122 203020 ~ 210184 (+) True LOC117599788
XM_026910051.2 mRNA upstream 672042 120176 ~ 134264 (+) True LOC113523954
XM_034313880.1 mRNA upstream 704327 85203 ~ 101979 (+) True LOC117599786
XM_034313776.1 mRNA downstream 380 832360 ~ 832825 (+) True LOC117599758
XM_026911740.2 mRNA downstream 27687 859667 ~ 861490 (+) True LOC113525267
XM_034313780.1 mRNA downstream 65020 897000 ~ 897286 (+) True LOC117599763
XM_034313794.1 mRNA downstream 182904 1014884 ~ 1036096 (+) True slc5a6a
XM_026947247.2 mRNA downstream 182904 1014884 ~ 1036096 (+) False slc5a6a
TU340986 other downstream 411077 1243057 ~ 1243672 (+) True G287892
XR_004580082.1 other downstream 427196 1259176 ~ 1264632 (+) False LOC117599677
TU341023 other downstream 526206 1358186 ~ 1359362 (+) False srp9
TU341376 other downstream 1164817 1996797 ~ 2008806 (+) False ptchd4
XR_004580079.1 other downstream 1301178 2133158 ~ 2141637 (+) False LOC113546780

Expression Profile