RNA id: TU340884


Basic Information

Item Value
RNA id TU340884
length 226
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G287814
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 990210 ~ 990435 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCGCAATGACTTTGAATTTAACTCtcaattatatttacaggttCAAGGAACCGCTATGGGGAAGAAATTTGCTCCAGCCTACGCGAACATTTATATGTCTGAGTGGGAAGAAACATTGTTTCCAAAGTGTCCCCACTTACCCGCAGTGTATTATCGATATCTGGATGACATCTTTGGGGTCTGGCACCATGACAGGGAACATTTTGACACCTTTTTGAATTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580134.1 lncRNA upstream 63571 926233 ~ 926639 (+) True LOC117599769
TU340626 lncRNA upstream 96706 801623 ~ 893504 (+) True G287630
TU340609 lncRNA upstream 187686 762431 ~ 802524 (+) True G287627
XR_004580133.1 lncRNA upstream 521806 454598 ~ 468404 (+) True LOC113525268
XR_004580130.1 lncRNA upstream 599008 388697 ~ 391202 (+) False LOC117599767
TU340887 lncRNA downstream 15232 1005667 ~ 1007006 (+) True G287817
TU340963 lncRNA downstream 193648 1184083 ~ 1184363 (+) True G287872
TU340985 lncRNA downstream 251426 1241861 ~ 1242067 (+) True G287891
TU341067 lncRNA downstream 444120 1434555 ~ 1435138 (+) True G287962
TU341152 lncRNA downstream 463140 1453575 ~ 1453870 (+) True G288036
XM_034313780.1 mRNA upstream 92924 897000 ~ 897286 (+) True LOC117599763
XM_026911740.2 mRNA upstream 128720 859667 ~ 861490 (+) True LOC113525267
XM_034313776.1 mRNA upstream 157385 832360 ~ 832825 (+) True LOC117599758
XM_034313778.1 mRNA upstream 158364 831420 ~ 831846 (+) True LOC117599761
XM_034313773.1 mRNA upstream 164047 824677 ~ 826163 (+) True LOC117599755
XM_034313794.1 mRNA downstream 24449 1014884 ~ 1036096 (+) True slc5a6a
XM_026947247.2 mRNA downstream 24449 1014884 ~ 1036096 (+) False slc5a6a
XM_034313889.1 mRNA downstream 213078 1203513 ~ 1208039 (+) True LOC117599792
XM_034313502.1 mRNA downstream 268741 1259176 ~ 1264632 (+) True LOC117599677
XM_034313501.1 mRNA downstream 268741 1259176 ~ 1264632 (+) False LOC117599677
TU340640 other upstream 91800 807193 ~ 898410 (+) False LOC117599757
TU340599 other upstream 92848 806306 ~ 897362 (+) False G287625
TU340986 other downstream 252622 1243057 ~ 1243672 (+) True G287892
XR_004580082.1 other downstream 268741 1259176 ~ 1264632 (+) False LOC117599677
TU341023 other downstream 367751 1358186 ~ 1359362 (+) False srp9
TU341376 other downstream 1006362 1996797 ~ 2008806 (+) False ptchd4
XR_004580079.1 other downstream 1142723 2133158 ~ 2141637 (+) False LOC113546780

Expression Profile