RNA id: TU341152


Basic Information

Item Value
RNA id TU341152
length 296
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G288036
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1453575 ~ 1453870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGATCCAAGTTTACACTAAGGACATCTGAAAGCACTTTAAAAACTTCACACCAGAATCCCTGTATTTTATGACAGAATATAAAACTATGAGCTAAATCAGCATCCTCCGATTTGCACTTATCACAAATAGGAGAGACATTGGGGAAAATCCtatgtaatttctttttagaaAAGTGTAATCTGTGTAGGACCTTAAATTGAATGAGGCATAATCTAGTGTTGACCGATTGCTTATCAATATCCTCCAAGCCACTCTGCCAAATCTCCTCAGAGATTCCAATTCCAATCTCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341067 lncRNA upstream 18437 1434555 ~ 1435138 (+) True G287962
TU340985 lncRNA upstream 211508 1241861 ~ 1242067 (+) True G287891
TU340963 lncRNA upstream 269212 1184083 ~ 1184363 (+) True G287872
TU340887 lncRNA upstream 446569 1005667 ~ 1007006 (+) True G287817
TU340884 lncRNA upstream 463140 990210 ~ 990435 (+) True G287814
TU341154 lncRNA downstream 1100 1454970 ~ 1455834 (+) True G288038
TU341156 lncRNA downstream 2038 1455908 ~ 1456374 (+) True G288039
TU341157 lncRNA downstream 2078 1455948 ~ 1456374 (+) False G288039
TU341167 lncRNA downstream 18843 1472713 ~ 1473097 (+) True G288047
TU341168 lncRNA downstream 20060 1473930 ~ 1475449 (+) True G288048
XM_034313722.1 mRNA upstream 74374 1364084 ~ 1379201 (+) True olfml2ba
XM_034313723.1 mRNA upstream 74374 1364084 ~ 1379201 (+) False olfml2ba
XM_034313724.1 mRNA upstream 74374 1364382 ~ 1379201 (+) False olfml2ba
XM_026928286.2 mRNA upstream 93459 1358201 ~ 1360116 (+) True srp9
XM_034313890.1 mRNA upstream 108944 1340508 ~ 1344631 (+) True LOC117599793
XM_026946895.2 mRNA downstream 18312 1472182 ~ 1519008 (+) True rxrgb
XM_026946898.2 mRNA downstream 22282 1476152 ~ 1478084 (+) True LOC113546822
XM_026946897.2 mRNA downstream 29749 1483619 ~ 1519008 (+) False rxrgb
XM_026946896.2 mRNA downstream 45941 1499811 ~ 1519008 (+) False rxrgb
XM_026946974.2 mRNA downstream 68069 1521939 ~ 1534003 (+) True lmx1a
TU341023 other upstream 94213 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 188943 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 209903 1243057 ~ 1243672 (+) True G287892
TU340615 other upstream 561567 812277 ~ 892008 (+) True G287628
TU340641 other upstream 632514 807193 ~ 821061 (+) True LOC117599757
TU341376 other downstream 542927 1996797 ~ 2008806 (+) False ptchd4
XR_004580079.1 other downstream 679288 2133158 ~ 2141637 (+) False LOC113546780
TU341918 other downstream 1035807 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 1911408 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 1913778 3367648 ~ 3367772 (+) True LOC113546886

Expression Profile