RNA id: XM_026946831.2


Basic Information

Item Value
RNA id XM_026946831.2
length 5408
RNA type mRNA
GC content 0.45
exon number 3
gene id ptchd4
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1996120 ~ 2021263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGATTAACGCGGATcgggtggaggaggaggaggcatgTCTTGAGCAGAAACTAAAAaaagcacacgcacacacacacacacacacacacacgcacgcacgcacacacacacacacacacacacacacgcacgagCACACAGAGGGTAGCCGATCAATAATCTGGTTTTTTGCAAACCGCAGCATGGGAGCGCGTGTCACATGCACTTGCTAGGCAAAAgcagcagaggaggaggtggtggaggaggagaaagaggaggaggtggtggaggaggaggtggatgATGCTGCGGCAAGCGATCTACGGCGCGCTCAAAGCCTCGTTCTACTGGCTCGGCTTGTTCGTGAGCCGGCACCCGGTGTTCTTCCTGACCGTGCCCGCGGTCCTCACGGCGCTGCTGGGCGGCGCGGCGCTGCGTGGATTCGCGCCCGAGGCTGACCTGGAGCGGCTGCTCGCGCCCGCGCACAGCCTCGCCAAGGTCGAGCGGCGCCTCGCCGACAGCCTCTTCCCGGTGGAGCGCTCCAAGCACCGCCTCTACTCGGACCTGCACACGCCGGGCCGCTACGGCCGCCTCATCTTGCTCGCGAAGCGCGGCGCCAACGTGCTCGAGCTGGCCGAGCAGGTGCTGCGCGTGCACCGGCACGTGCTGGAGCTGCGCGTCGCGCATCGCGGCTTCAACTACACGTTCGCGCACCTCTGCGTGCTCGACGGCCAGCGCGAGCCCCGCCGATGCGTCCTCGATGATATAATCGCGATCTTCGAGGACATCCGCGAGGCCATTCTGAACAACAACACGTTCGCTAAAGTGCCAGTGAGCTACCCGAACACCACGTTAAGGgaTGGCCGAGTGGCATTTATCGGACACCAGCTGGGCAGTGTTGTGCTGGCATCACATGGGCGTGAGAGGCATGTCAAGTCGGCACGAGCTGTCCAGATCACTTACTACCTACGTCGGCTGGCTCCCACAGTGCAGGATGCTATTGCTGAAAAATGGGAGAGCGAGTTTGGCAAGATGGTGCAACATTTAGCAACAGCCAGCCCTGACCTGCATGTGCAGGCATTAACATCGTTTGGTCTGTGGCGTGACTTTCATGCTACAGGTGCACTGGCGAAGGGCGAGGTGCTGGTGGGCCTGGTGCTGGTGCTACTGGCTGCCACCATCTCCAGCTCTATGCGCGACTGTCTCCGTGGTAAGCCCTTCCTGGGGCTGCTCGGTGTGCTCACTGTCTGCAGCGCCAATGTCACCGCTGCTGGCATCTTTTTCATCTCGCATGGCAAGTTCAACTCCACACTGCTCGGTATCCCCTTCTTTGCGATGGGGCATGGAACCAAAGGAGTGTTTGAGCTCCTGGCTGGCTGGAGAAGAACCCGAGAGAGTCTGCCCTTCAAAGAGCGAGTGGCAGATGCCTTTGCTGATGTGATGGTATGCTACACCATGACAAGTTCATTGTATATCATCACGTTTGGCATGGGCGCCAGTCCTTTCACCAACATCGAGTCCGTGAAGGTGTTCTGTCAGAGCATGTGTGTGGCCATCCTGGTAAATTACTTCTACGTCTTTTCTTTTTATGGCTCCTGCCTGGTGTTTGCTGGCCAACTTGAGCAGAACCGCTACCACAGCGTTTTCTGCTGCAAAATCCCCTCAGTAGAATACCTGGACCGCCAGCCCACATGGTTCAAGACCATGATGAGTGATGGCCATGATCTCTCCACACACCATGACAGTATGCCCTACCAGAATCACTTTATTCAGCACTTTCTGAGGGAGCATTACACAGAGTGGATTACTAACACATATGTCAAGCCCTTTGTGGTCATTCTCTACCTGATTTATGCCTCGTTTTCATTCATGGGATGTTTACAAATCAGTGATGGCTACAATATAGTGAATTTATTAGCCAGCAATTCACCCAGTGTGTCATTTGCCCTGACCCAGCAGAAATTGTTCAGCAACTATAGCCCAGTGATAGGATTCTACATCTATGAGCCCATTGAATACTGGAACTCCACAGTACAGGAGCACCTCAAGACACTAGGGCAGGGTTTCAATAAGATTTCATGGATtgataattactttaattatttgAAGGTCACAAATGTCAGTGCATCAACCAAAAGTGATTTCATAAATATTCTCAAGACTTCATTTCTAAGGAGACCAGAGTATCAGCACTTCACAGAAGACATCATTTTCTCAAAAAATGGGGATGAGTATGACATCATTGCATCCAGGATGTACTTGGTAGCCAGAACCACAGAGAAGACAAGggaggaggtggtggagctGCTTGAGAGACTCAGACCCCTCTCTCTTATAAACAGCATCAAGTTCATTGTCTTCAACCCCACCTTTGTGTTCATGGACCGCTACAGTTCCTCGGTTGTCTCCCCAATTCTAACATCAGGTTTCAGTGTCCTGACCATCCTAATCCTCACTTTCTTCCTTGTCATTAACCCCTTAGGGAACTTCTGGTTGATTTTGACCGTCACCTCTGTGGAGCTGGGTGTCCTAGGCCTCATGACACTCTGGAATGTAGATATGGACAGTATCTCTATCCTGTGCCTTATTTATACTCTCAACTTTGCCATGGATCACTGTGCCCCTCACCTCTACACATTTGTACTGGCCACCGAGCACACCAGGACTCAATGCATCAAGATTTCGCTCGAAGAGCATGGGGCAGCCATTTTACAGAATGCCTCATGCTTTGTGATTGGGATAATGCCCCTGCTCTTTGTGCCTTCCAACCTGACCTACACACTGTTCAAGTGCTCGTTACTCACCACAGGATGTACAGTGCTGCACTGTTTCATCATCCTCCCAGTGTTCTTGacttttttccctccctccaAGAAAAGGCACAAGAAAAAGAAACGGGCAAAGAGGAAAGAACGGGAGCGGGAGCGGGAGAGGGAGGAGATTGAGTGCATCGAAGTCAGAGATAACCCTGACCATGTGACCAGTGTCTGagatgtttgtgtgagtgtaacAGGGAATGTCCCGTCCAGTAGGACGAAATTACATGTAGCATTTCACAGGTCATGGGGGTCAAAGTGGATCCACCTTTTCAAGTGGGATGACCCTCAACAACTCCACTAATCATCCAGACTAGTACATAGCATCTGCCTGCTTCTGTTGCCAGGTCACCTGTTATTTGGGTAAGACAAAAATTGGAAGTCTGGGAAGTAAAGCCTGCAGTTCATGTTAAAATTATCGCACGAGCTGCTAAAAAATGGGGAGTTATTTCTGAGAGTAGATAGAGAGAGTAGTACTAATACTATTAAGTATTAAATTGTCCAAAATTGTAGCCTATGTCCTAAATGTGGCCAGAAATcaatatgtttataaatgaaaggctgaaaataatatatttaagatTACTGAAAATCCTGTGTGctgaatatgtatttttattagacAAAATGTATAGACTTGGAATTCAGTAATTATCGTCCTGGTTATCAAATATGTGCAAAAGCTAATGAGCAAGCTTTCATAAATGTAGCATGACTTTAAGTTTATTGAATAGTTGAGCAGAGCAGATGTTATACACTGTCCATTCTACACAAATGAACAGGAAGGTACAATTTCATGACACTACATTGGAACAAGATGTCCTTTGTAATTTGTCTATGTTTCCATCCCTTTTGCAGCATACTGAAGGTGTAATACAAGAACCAACAAGCATGTGCTGAGAATTAACCAAATGTTTCAAGTCATTTTATATGTCCAGAATAGTAGCTGAATTTATGTGGATAAATGGACATTACAATAGACATGGTAGTGACATTGAAAGTGGCAGTGAAAGAATTTTTCCAAATTATTACCAATTACAGTCAGCAGCAGCCTTTGTTTATTCACCCACATTaacattctgctttttttttcctttctttttttaataaagtgactTACTAGTAAGACAGTATACAGTCCAAGCATCTATCTTAAAGAGCTGTCAGCAGTGCCAGTGTTATAGAATTAGATATGCACCAGTTGACAAGAACAATGTGCAAAATAGCTGTAGGAAGAACACAGGCTGCAGGAACTAAACACAGTAGTTGGAATAATTGCTAGAACATAGAGAACAATGAATATTAGGTACATAAGCAGTCCGTCAactaaaacaatacaatattaaaaataatacataacaataaaaatagtgTAGTATGAGCAAATTCCTATGGGCTAtattacaacaataaaaaaggTACAATACATACCCTGCCATTACGAAAATATTATGTTATCAGGCTTAATTTTTTATCATTgcctaatataaatattatggtCCTTTGATTTTTAACAAcatattttaaaggaaaattccaTCAGATACAACTAATGAGCTAATCTAACTTATGACAGGTAGTTTAATATTAGTCAGCCATTAGTTCAACCTCAATTTTAGAATAgcataaaacatatatttaaagttgactGAGTATTTTAGGAGCTAGTATTTAATTTATCCTCGTTTGTGAAAGCCATGGGTAAATAATGTTGTCTATGGCAATATGCTGGGCAAAATAAAATGCTAGCTAtctgctacaaaaaaaaactttgaaataTTGGTGAATCTTCTCCTGTTAAACATTGGATTTGCTATGTTGATTGTCAACTATTtgtattagatttttatttgtgaaaacTAGCATGTGTGATTATTGCCAGAGATTGTTGCCAGTGTTAGATCCATTTGCTATTACTGCTCCAGTCAAGGGTGCAATCGTGAAGGTATTGACGAATTATTCCAAAGAAAGATAACTGCAAGAGAGCTACATTAACCAGTGTTTTACGCATCATGGTCTCAGGATTGTAAATCTGGAAGAATtcacctgattcagctcacaataaaattttacaaataGTTAAGGTTAGGGCATGGTCAGCAGGTGTGTCTTTTATTCTTACAGTCTTAATTTGTATGTAATTCAACATCACCTTAGTAACTCATTAGAATTCCTGCTTTCTGTGAGAACACGTTGAGACAGGCAGACTATGTGGACCAAAAAGTTGAAAGTGAGCATGAATATATAGCAATTGCAGAACAATACATCAAATACAACACTAACCCCATATTGAAGCAGTGGTGGCTTATTGAAGAGGATGTGTATGGTTTCCCAGAATGTCAGGCATTGAACACCTTGTGTAAATGAACACCATGTTCATCTGACCAGCCGTTAAAGCAAATGGAGGTCTTGATGTGTAACTAATGATGGCATCACTATGTAATTTTTATGTAGGAAGAGGGCATGCCAATGAAGTAGgctatataaagaaaagaaatgcattaaatcatATACTTCCCAAGAATGACTGTCTACgcatgtaatgtatgtatgcatgtatttagttagtgtgcatttttgtttgtttttacattttgagaaatgttgcaaca

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
K24682 PTCHD; patched domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341372 lncRNA upstream 441 1995460 ~ 1995679 (+) True G288207
TU341357 lncRNA upstream 61337 1934577 ~ 1934783 (+) True G288192
TU341325 lncRNA upstream 297953 1695908 ~ 1698167 (+) True G288171
TU341277 lncRNA upstream 397527 1598391 ~ 1598593 (+) True G288134
XR_004580120.1 lncRNA upstream 428803 1566196 ~ 1567317 (+) True LOC117599747
TU341398 lncRNA downstream 5606 2026869 ~ 2028706 (+) True G288225
TU341394 lncRNA downstream 6080 2027343 ~ 2073881 (+) False G288225
TU341415 lncRNA downstream 49771 2071034 ~ 2071276 (+) True G288242
XR_004580150.1 lncRNA downstream 125952 2147215 ~ 2151238 (+) True LOC117599781
TU341667 lncRNA downstream 194314 2215577 ~ 2218638 (+) True G288461
XM_034313894.1 mRNA upstream 80260 1912614 ~ 1915860 (+) True si:dkey-1j5.4
XM_026946973.2 mRNA upstream 94127 1892769 ~ 1901993 (+) False lbr
XM_026946971.2 mRNA upstream 94127 1892770 ~ 1901993 (+) True lbr
XM_026946972.2 mRNA upstream 94127 1893101 ~ 1901993 (+) False lbr
XM_034313663.1 mRNA upstream 106927 1824985 ~ 1889193 (+) True enah
XM_026946948.2 mRNA downstream 71212 2092475 ~ 2119917 (+) True tnfrsf21
XM_034313448.1 mRNA downstream 101298 2122561 ~ 2131271 (+) True LOC117599673
XM_034313449.1 mRNA downstream 103725 2124988 ~ 2131271 (+) False LOC117599673
XM_026946812.2 mRNA downstream 111895 2133158 ~ 2142181 (+) True LOC113546780
XM_034313859.1 mRNA downstream 129971 2151234 ~ 2158694 (+) True adgrf3b
TU341023 other upstream 636758 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 731488 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 752448 1243057 ~ 1243672 (+) True G287892
TU340615 other upstream 1104112 812277 ~ 892008 (+) True G287628
TU340641 other upstream 1175059 807193 ~ 821061 (+) True LOC117599757
XR_004580079.1 other downstream 111895 2133158 ~ 2141637 (+) False LOC113546780
TU341918 other downstream 468414 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 1344015 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 1346385 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1922232 3943495 ~ 3979785 (+) False ipo13

Expression Profile