RNA id: TU341394


Basic Information

Item Value
RNA id TU341394
length 458
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G288225
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2026869 ~ 2073881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCTATAcataaagatatttatttagcttgggaaaaaaaaaaaaaatctcagttcatGCAATTCAGTTACAAAAATCATGTAAACAGGTTCACTTGGAGATACGTGCTGAATGTCTGCACAACAATTTTCcccacatttttaaataaaaatggaatgtTAAAGCCAATTACACTCTACAGAATTTAAGTTGGAAAAACGTCATAACTGAACAgcagaatatttatttcatttaactcgACATTGTatagttgtgtttatttattgctatAGGGATTAAAATGagacacgcacacgcgtgcgcacacacacacacacacacacacacacacacacacctgtgcctGCATTTGCCGGACCCCGGCatttgtgtgtggtttttgagactGTCCTGCCAGGGTCTGATTCACAAATGCAATTCAAAGTACTTCATCTTTCAGCCTATCAGGTGTGCTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341372 lncRNA upstream 31664 1995460 ~ 1995679 (+) True G288207
TU341357 lncRNA upstream 92560 1934577 ~ 1934783 (+) True G288192
TU341325 lncRNA upstream 329176 1695908 ~ 1698167 (+) True G288171
TU341277 lncRNA upstream 428750 1598391 ~ 1598593 (+) True G288134
XR_004580120.1 lncRNA upstream 460026 1566196 ~ 1567317 (+) True LOC117599747
XR_004580150.1 lncRNA downstream 73334 2147215 ~ 2151238 (+) True LOC117599781
TU341667 lncRNA downstream 141696 2215577 ~ 2218638 (+) True G288461
TU341720 lncRNA downstream 251777 2325658 ~ 2326289 (+) True G288512
TU341802 lncRNA downstream 374541 2448422 ~ 2453374 (+) True G288581
TU341932 lncRNA downstream 432688 2506569 ~ 2515375 (+) True G288694
XM_026946831.2 mRNA upstream 6080 1996120 ~ 2021263 (+) True ptchd4
XM_034313894.1 mRNA upstream 111483 1912614 ~ 1915860 (+) True si:dkey-1j5.4
XM_026946973.2 mRNA upstream 125350 1892769 ~ 1901993 (+) False lbr
XM_026946948.2 mRNA downstream 18594 2092475 ~ 2119917 (+) True tnfrsf21
XM_034313448.1 mRNA downstream 48680 2122561 ~ 2131271 (+) True LOC117599673
XM_034313449.1 mRNA downstream 51107 2124988 ~ 2131271 (+) False LOC117599673
XM_026946812.2 mRNA downstream 59277 2133158 ~ 2142181 (+) True LOC113546780
XM_034313859.1 mRNA downstream 77353 2151234 ~ 2158694 (+) True adgrf3b
TU341376 other upstream 18537 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 667981 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 762711 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 783671 1243057 ~ 1243672 (+) True G287892
TU340615 other upstream 1135335 812277 ~ 892008 (+) True G287628
XR_004580079.1 other downstream 59277 2133158 ~ 2141637 (+) False LOC113546780
TU341918 other downstream 415796 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 1291397 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 1293767 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1869614 3943495 ~ 3979785 (+) False ipo13

Expression Profile