RNA id: TU341802


Basic Information

Item Value
RNA id TU341802
length 4739
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G288581
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2448422 ~ 2453374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACAGTCTTTCTTGGTATCGGGCCCCTTGGGTCCACGCACGCGTTCATCCACGGGGATCTGCTGAAGGAAGGTGAAGCCCTCTGGCTGAGGAAAATACGGCGTCTCCTTCTGCCCGAAGTTGAATTCCACAGCGCAGTTGTGGCAGAGGACATGTGGGAAGAGCGCACGTCCAGCCAGAGTCTCCTTACCGACTTTGAACGCCACACCGAGATCCTTCCCGTTCTTGGAATAGGAAATTTCAACTTCATCCCCATCAAAATTAAGCAGCCAACAACATCGTTTTCATCAAAAGCCTCGCCGTAGTCTTCAGTCACACAATTTGCTGTCTTCTTCCCCTTGACTGCGAAAGAATAAGAACACTCCTCCTCTCCTAGTGAGAATCAAAGGCATATAAATCACACGTTAATGTGGAGTAATACACCGGGGAAAGCGCAGGATGCATCTGTTCCTTTCATGGCACACAAACCTAAACACTAGGCTTGGCATGACGAACAGTATGGGAATCGCCAACGAATTACGACTACTGCGATTTAAATGTCTGGTGTCTGCAGCTTCAAGAtcgacagaaacagaaaaaaagtgcGTTATATCCAGTGtaatgtgtttccttttcacCTATTTTATCATCCTATAAGAAGCttaataacctgctgtctgactATGAAAACATCTTTTTCTGATGAATCTTAGTTTCCCTTAAAACTGTGAAAGTCTTCATTCGCAAAACCTGAACAGAGGATTaaactgagaaaatgaaaaatgaaacgtGTTGTTTATCAGGACGACTTTGTTATACAAGAGTTGAATAATTAATCTCCGATGCTCTTCACCACAGAGCACGTgtgtagtttatataattttatttcaattttataatgagcttagttacagctaataactttAGGTTTATTTAGTCTTGACTTCACTGCAGCATTCCTCACCTTCTTAACAggtaattatatttatatgtattttaaaaaaaataaataaataaataaaacgctAGAGACATTAGAGATCGCAGCTGCAGCAGTCTTGTAAGCAGCTCATGGCGTTTTCCCCCGCTGTAATGACGCGCTGTGGTCATGACGTGTTGCACGTGTCTGTCTACAGTATTATGGTCAGTGCACTTACCGAGCAGCAAACTGCCATTCGCCAGGGACCAGCCAATCTGCACATCATGGACATCCATGTTCTTACTCTTCACATGCTTCACAGGGATCTTCTCAATAATCTGCAGGTTTATTTTATCACAAGTCATTCAGACGCCCGATTTACTCTACACGCAGAGATAAAACGCACGCAGTGTATGAAGGGCCGCGATTCTCACCTTCATTTCGATGCAGACTTTTCCTTTGCTCACGCCGTAGGAAGCTCGGCCACCGGCCCAAAGGTAGGCAAAGCTCTCCATCGTGAGTGAAGTGGCGCTGTAGCGGTCTCGTGACACTTTGAAGTGCAGGTCACAGTTGTCTGGTCCAGACACACCAGAGTATCATCAAACTCCTCGTCCTCTTCCTCCAGAGGTGGCAGGGGAGATTTGGCCCTGAAACAGACGAGGCAGAGCCATTAAACCCAGAAGACAAAGGGCTAACGAGCCCTGACTGGAGCACACTGGCACAACAATCCAGAGTAAAGGACTGCCTCTGCCGCAGCAgtgagatttaaataaaaacacggACATCATTATGGCGGGACATAAGACTTAGCTTGGTTTTGCATAGGAAGTGTCTTTAAGGTCTAATCAGACAGCATGGGTCCTAAGAAAAAGCTGTTGGGCTTTGTTGTTAcagaaactaataataaaatagataaaGACTCGTCACTGATCAGAGGAGACATGATTTTCAAagtgtttaaattattaaaaagccCTCCAGTATATTCATATCCCCAAGCTGTGTCTCATGTAGGTCATGATGAGCCAAATACTTACACAGGAATGGACTCCTACAGAAGGTAGGTCTGAAACTAGTCgattttaagaaataaacatttcatggGAAGAAAAAGTGTTCAATTCTAATGTGCCATAAAAGGAAATATAATACTCACCTGCTTAACAAGCAAGAAATAAAAACGTACTGTCTTaccttcactcactcactcacacaaacGCACTCAAAGTAAAAACGAAACCAGTACCAAGAAATACAAAGACAAGGAACGCAATACAAACTGGACGTCCagagaaacaataaaaaaaaaaaaaaaaaaaactgaataaataatcCTGGAAGAGAACATTAAGTCAGAGAACAGCTAAATGTGCAATGCATGCAAGCCACGAAGAATGAACGCTGGAACTTTGCCACAACGACCCCATCGTGCTCGTTATCTCCTGCATGTGGTTCATTACCGGAACACCTCAATCGCCACAAGGCATGCGTTCGGCTACATGACACGCTGAGATCTGGACATAACGCCCCTCATCCCTTAGCCCTGTGAGCCAAAGGAGTGCTTTCACAAACCATATGTGCGTATAACAATGTCCCTGCCAAACAGTATGAGGAACAATGACATGGTTTTAAAACttaaatccaaataaatatAGAGATTCTGCAGTCTTCTCagacattttacacaaaagCACTGCAaggtaaggttttttttttttaaagaataaccctcaaatgatttatattttattaaagagggtgttttttatattatattatattatattataggtAAGGCATTGGCTTTTAAAGCCAATACATATTAAAAGTGGCACTTCGGGGATAATGAAGGCCATTACTCCCATCCTTACCGGCTGTATTTGCTTTCTTCAATAAATTCAAAGTAGCCCCTTCCATGTTCCTCTCGGCGTCTCTTAACACCCTTCTTATTCTTCTGATCAGCACTGATGTCTTTGTCCGCATCTcctttgaaaataaaacaaacagtgaTGAAATGCTCAGGCGTGTTGGACCCTGGTTAAGGGTGGCCCACACATCCAGGAGCTCTCAGAGGCCTCCTTCCCACACGCTTACTCAAGTATTCAGTTGACCACCTCtgatgagtttaaaaaaaagaaaagaaaaaaaagtgtattcaTGCtctagatatataaatatatcaggGTGAGAAGCCCATTCTGGTGGAAATGGACCAGAAGCTTAACAttacatttcaaataatatGAGCAATGAGGaacaataatgttttatatttacactcaGTCCTTTGTGCCCCCCTCCCACACAAAATAAAGGGAgaataaacgtgtgtgtgtgtgtgtgtgtgtataaatacacCTGGAAAGGGTTTAACTTCATGACCAGTTACTTACATGCTGATCATTTTTCCAGCACTGACGCGGTACGTGACGTGACCTCGGTTAGCTTCAGGGCTAATCTGATTAGTCAACATGTACAcccacattacacacatatgctgttaaatttatttacatttatatttctatagagagaaaaagagctaACAAGCTGCAGTCCTGCGCCAGAACCGAAAAACATATCCGTGTTTAAAACCTCTAAAGTCGGCTAAGACTAACAAATTAGCAAATGATGctagacaaaaaaacagcttcctCACCAGCAGAGGCGCCGTGTATCTATCAGTTATAATCTCTAGTGACCGaagaaaatctttttaaaatgataaaaataaaaaaaccagcCGTACAAGAACGTTCATTAATTGCCTGGACAATAGCAGGAGCTCCCTGGAGGCCCcatgagctctctctctctctctctccgctcattgtcccagcagcagcagcagcagcgcggCGCTAGTGACTCGCACAGACTCTCTCCGTCTCCAGGATACCCGGATAGGCTAAGCTAGGCTAGGCTAAGCTAATTAGCTCGCTGGCTAACGGGGTAAAGAGTGCACCGGGATTCCGGGCCGAACCTGCACAATAAGCGCAAGAAAGAAACTCTCCTGATAAAATAAACAGGACACCAATAAGCTAAAGATTTCACGAACCCGCCGAGAAGCCGCCCTTGCTGCGCTACACTAAGCGCTTTATCCACCGCGCGAGCGACAAAAGCCGCTAAACGGGCCACAGCGTGAAGGCTCGCGCTTTAACCCCCTGCAGCGGAACTCACCCTCAGCCGCCTGCGACTCGCGCTCACCGTCTTCTTCCTCGATTTTATCGGCGGCGtcgtcttcctcctcctcctcctcttcttcctcttcgtCCTCCTCGAACGCTTTGTCTATCTCAATCCCGGCGTctccatcttcctcctcctgctcctgctcctcctcctcgtcgGCCATTTCGTCGTCCTGCCCAATGTCCTCCTCGCAGTTGCCCTGCTCGCTCTCCGGcgcgccgccgccgccgcctcCATTTTCCTCCTCGGCCTCCATGTTCTCTCCCGCGGGCTCTTCGTCCTCCTCCAGCTCTTCGCCCATGAACTCTTGCTCGAGCTCAGCGCCATGCCCCTCGGCGCCattttcctcctcttcatcttccGCCTCGAGCGCGGCGTCTCCGGCCCGGGCCTCGGCGTCGAGCGCGGCCTGCAGCCGGTCCATGAGCTCGGCCTTCAGGCCCTTATCCGAGAGCTGCCGCTTCTTCAGCTCATCCTTCAGCTCGTTCACCTTCAGCTTCTTCACGTTAATCGTGCTCATGTTTGCTCTTGCTTTACAAGTAGAAATTACTGGTCTGGTTCGGATGTAAAATGTTTCTGTCGCGCCTCAGGACAACAATGAGCCGCCTGCTTCAGACTCCACAGCGCCGAGCCGCGTTGATCCCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341720 lncRNA upstream 122133 2325658 ~ 2326289 (+) True G288512
TU341667 lncRNA upstream 229784 2215577 ~ 2218638 (+) True G288461
XR_004580150.1 lncRNA upstream 297184 2147215 ~ 2151238 (+) True LOC117599781
TU341394 lncRNA upstream 374541 2027343 ~ 2073881 (+) False G288225
TU341415 lncRNA upstream 377146 2071034 ~ 2071276 (+) True G288242
TU341932 lncRNA downstream 53195 2506569 ~ 2515375 (+) True G288694
TU341934 lncRNA downstream 53195 2506569 ~ 2510414 (+) False G288694
TU341983 lncRNA downstream 127935 2581309 ~ 2608373 (+) True G288734
TU341993 lncRNA downstream 174384 2627758 ~ 2628318 (+) True G288740
TU342050 lncRNA downstream 310896 2764270 ~ 2765055 (+) True G288789
XM_026947002.2 mRNA upstream 9382 2436698 ~ 2439040 (+) True lft1
XM_026946863.2 mRNA upstream 93824 2336070 ~ 2354598 (+) False fzd3a
XM_026946862.2 mRNA upstream 93824 2336071 ~ 2354598 (+) True fzd3a
XM_026946983.2 mRNA upstream 236221 2189759 ~ 2212201 (+) True tdrd6
XM_026946939.2 mRNA upstream 267266 2162431 ~ 2181156 (+) True pla2g7
XM_026946966.2 mRNA downstream 1419 2454793 ~ 2474603 (+) True kif26bb
XM_026946967.2 mRNA downstream 1419 2454793 ~ 2470912 (+) False kif26bb
XM_026946818.2 mRNA downstream 31662 2485036 ~ 2495853 (+) False cnstb
XM_026946819.2 mRNA downstream 31662 2485036 ~ 2495853 (+) False cnstb
XM_026946998.2 mRNA downstream 158827 2612201 ~ 2618880 (+) False stmn4
XR_004580079.1 other upstream 306785 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 439616 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1089060 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1183790 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 1204750 1243057 ~ 1243672 (+) True G287892
TU341918 other downstream 36303 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 911904 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 914274 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1490121 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1534678 3988052 ~ 3988123 (+) True trnad-guc_14

Expression Profile