RNA id: XM_026946819.2


Basic Information

Item Value
RNA id XM_026946819.2
length 1933
RNA type mRNA
GC content 0.43
exon number 10
gene id cnstb
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2485036 ~ 2496052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATCGAAAACAGCTACACAGCTGTAAAAGCCAAAACCCAAACCTGATTCCAGATGTGTGTGTCAACCAGGCAAAGCTCTGCATACAGAAACCACTGGACTACGGCTGCAGCTGCAGGTCTTTATGGTGTTCGCTTTGCAATGCAAATATTTGAACATTGAATAAGTAATGGTCACCTGCCAGAATATTTTAAAGTTATGGGAGACCCCAAAACAGAAGAGGACATGAGAGGACAGGAAGACCACATCACTCTGTGGCCCAATGGTACAGAAGCGATCATCAGCTCAGACCTCTCTGTTTCTCATGAGAACCAGAACAAATCGATGATGAGAGAAATGATGGATTGGCCACTGGAGAAACAACACATGATGAATAACAAGCCAGAAGAGAAATCTGAGAACAATACCATAAGGTTCTCCTTAGATGGCAGTGCATCAGGTAATTTGCATAGTGCTACAGGGCCCAGTCCTGCCTTTTTGGCTGCATTGGCTTCTCTGGGTGAACACACCGATCACATGCTCTTGCCTCACTCGTTACATCAGATAGCAGAAGCTTATTTTCTTGAAGAAGACTATCAGTGGGCAGTTCACTTCCTGCATTTGGAGATGCTATATCATGAGAGACTGCTTTCCAACTTGGCCTCCACGCAGAAGGCCTGGGAATCCAGGTGGAAGGCTGTTTCTCAAGCCAAAAATGGTTCTCCTGTGAAGATCCACTATACCGAGCCCGAGGCAAAGCACATGAACTCTCTGAATCTCATCTGCAGATCACACCGAAGACCTAATCGCAGTGGGGAAAAGGTAACCAAGGAGAGCATTACAGTTCAGTACAGTTCAAGTACAGGAAATCCTTTTAAAATGAAGGAGTGGACAGAGCAGCCATGGAGTGACCCAGAAGAGGAAAATGGGGGTGAAGAAGAGGACAGAGAGGCTGAAAGTTTGACTGAGGTGGTGCAGGAGGCGGTGGCCAGAAGACAGCAGTTATCTGGGGAAGAACTGACTGAACCCATTGAAGTTGAGGAGACCTTTCCCTCCAATGGTCTCATCTCCATCTTGAAGAAGAGAACATGTCCGGAGGAATCCAGTCCTGTCAATCACTCTCCACCCAGAACCTCCTCCAAATTCAAAGTCCGCTTCAGTGAAACAGATGCCTTACTGGACAATGATGAAGAGGGTGAAGACTCCTGTTTGTTCCTCCTTTTCCTGTGCCTGGTAACGGTGGTCATCAGCATGGGAGGTACCATGCTCTACTGCTTCCTGGGTGGGGCTTATTCAAATATTTGCACTGATTTCTCACACAACATGGACTTCTGCTCTGGATTTATACGCCGAGTGGTGGACATTCTCACACACTGGTTCATTCCTGCATCATCATAGCCCTGTTGCACTGGTAACACACTCCTGTTTTTCCTTCTAATCTGTTTTCATTGtcaaacagcagaaacaaaGGATACCTCTTTACCTGATGAAGACAACTGGACAAGCATTCATGTGTAAAAGCAGGCGAACTTAATGTCAGTTAGTGGAGTCTGAGCTTCCACTATACACAGATTGTGTAGaattcatattatattatattaactaCTGCATCAGATTAACTAATAACTCTGTTGAGATAATTCCGCTGATGGCTTGTTTCACCagttctattttatttcttttgttgaaATATGAAGAAATAATGTTCCTTAATTATGTACTGGTAACTTTATACTGCACAGTTGACAACTTTATCACCACAGAATTTGCTTGCTTATAAATCTTAACCTTgttttgtattatataatatcagGCAATATTTTATGCTCACAATCTTTTATGACTCACAAGTGCACACATCTGGAAATTCTTTGTACATGATGTACatgatgtgcaaaaaaaaaggttgattcGTCGCAGCAGAGGACCAGATGAAAAGCAGGGTAGTATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341802 lncRNA upstream 31662 2448422 ~ 2453374 (+) True G288581
TU341720 lncRNA upstream 158747 2325658 ~ 2326289 (+) True G288512
TU341667 lncRNA upstream 266398 2215577 ~ 2218638 (+) True G288461
XR_004580150.1 lncRNA upstream 333798 2147215 ~ 2151238 (+) True LOC117599781
TU341415 lncRNA upstream 413760 2071034 ~ 2071276 (+) True G288242
TU341932 lncRNA downstream 10716 2506569 ~ 2515375 (+) True G288694
TU341934 lncRNA downstream 10716 2506569 ~ 2510414 (+) False G288694
TU341983 lncRNA downstream 85456 2581309 ~ 2608373 (+) True G288734
TU341993 lncRNA downstream 131905 2627758 ~ 2628318 (+) True G288740
TU342050 lncRNA downstream 268417 2764270 ~ 2765055 (+) True G288789
XM_026946966.2 mRNA upstream 10433 2454793 ~ 2474603 (+) True kif26bb
XM_026946967.2 mRNA upstream 14124 2454793 ~ 2470912 (+) False kif26bb
XM_026947002.2 mRNA upstream 45996 2436698 ~ 2439040 (+) True lft1
XM_026946863.2 mRNA upstream 130438 2336070 ~ 2354598 (+) False fzd3a
XM_026946862.2 mRNA upstream 130438 2336071 ~ 2354598 (+) True fzd3a
XM_026946998.2 mRNA downstream 116348 2612201 ~ 2618880 (+) False stmn4
XM_026947000.2 mRNA downstream 116468 2612321 ~ 2618880 (+) False stmn4
XM_026946999.2 mRNA downstream 116647 2612500 ~ 2618880 (+) True stmn4
XM_026946958.2 mRNA downstream 144427 2640280 ~ 2644268 (+) True paqr8
XM_026946959.2 mRNA downstream 144427 2640280 ~ 2644268 (+) False paqr8
XR_004580079.1 other upstream 343399 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 476230 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1125674 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1220404 1259176 ~ 1264632 (+) False LOC117599677
TU340986 other upstream 1241364 1243057 ~ 1243672 (+) True G287892
XR_003404755.1 other downstream 869425 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 871795 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1447642 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1492199 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 1567782 4063635 ~ 4069715 (+) False G289531

Expression Profile