RNA id: TU341934


Basic Information

Item Value
RNA id TU341934
length 3175
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G288694
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2506569 ~ 2515375 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGggttatattcattttaattaattcagcTAGCTACAAAATGTCAACCACGTCACAGACTGACAGGATACAGAGGGAGTTTTTAATATTACATGCATTGAGGACACCAGTCTCACAGTTTAACCTATGTGTCATTCAGGTAAGGTATTTATTTGTCTTCTTATACAGACTATTCAACATCGTAGCAATTTGGTGTGCATAGCTCTAAAGTACAGAAGCAacaaaaacccttttttttttgtcatggattattttctttttctttttttttaaaccagtaaCAAACCACACAGGGAAAGTAAACTAACAGGATACAGTCTTCTTATAAAAGTAAGATCTCTCAGAAATatgcatctttgctttacattgcaaatgtttgtttatttatttttttctcagagcATCCAAAACCTATGATACAGAAAACAACTAGTCTCCACCATTCAGCACTTCAGTCATTATCTTTTCCAGGCTGCATAATCATTTAGAAAACAGGTCATTTTTGCAGAACCACCACTTTTGTCATGTCTGTTACAGTTCTTCTTTCGGTCATGTTGCATTATGTTACATCGATGGTCACagtctgtaaatatatattgaCAGAAAGAGAGCACTATTGCAAACTTGCAGGAATATGGAACGTTCAACTGTGTCCTAATACTGAGCATGCTTTGTCAATTTTTGCTActgccatgatttttttttatatttttaagacaagttttatttataagacTCTAAAATCTACTATTCATCATGCATAATGCACAATTCACACCACTTGGAATGCAATGTCTATTACAGCTACAGAATCTAGTTGCACTTTGTCTAAACAGTAACTGATTATGTTTGTGATGAGGAAAATGAACCAAGGAAGGATACTGTAAGTGCTTTTGTATCATCATCATATAATTAATCATCTTTTACCCATTCATCATTTGCCATGACAACATCAAAATAAGGAGCATGACAGTAGCCTAATGAAATGACACAGTTTTACTAAGacgatactgagatactgaaaAGGAAAGACAGTTTGTAGAGCATTCCTATTATATATTTCATCCAGTAAAGAgatttatatcatatataatatatatgtgacaaaaaaagaataaaaacttcACAAGTGAGCTAGAGCCATCGAGCCAGCACTATATACAACCTTTGGAAAGAATGATACAGAGTATAAGAAATCATTTTACGAGGACTATCATTGAAAAAGCCGACAGACAGCACACAGAACAACATTTACAATGTAGGGGtgatatgtgcatgtgtgcaaacCTAGAAGGTAAATACCAAGATAAAAGCATGTTTGCGCCTTTTGACAAACTGCATGGTTAGTAAAAGCAGGCATTTCAGACGCTTAACCGCTGCCAAGCATCTTTGTGGCCCTCTGGTTAGCTTCATCAATCCTGGTCTTGTTGGACTCAGCCTGagagacaaCTTGTCCATGATCCTGTCAATTTGGCGATTCTGAGTATCAATCTCATTACCCATGTCAAGGGCCATGTGGCGCAGGTTACCAATGATGCCTCCCACCTGCTCCAAGTTCTCATCCATCTCATTTTCCCGGGCATCATCTGTTACCCTGAACAGACAATCACATACAGGACAGGACATGAGTACATTATAGGAGTATTTCATGGCTCTAGGCTCCCCGATTCAAATTTGAGCTTGGGTTAGGtctttcgcatgttctccccatgtcaaagtgggtttcttctgggtgcTCTGGTTCCCTCCTACATCATCAagacatgccagtaggtggattggtgactctaaattgtccataggcatgaatgagtgtgcataagtgtgtgtgggatggactggcgtcccaccCTGGGTATGTCCCCGTCaacgctgaccaggataaagtggttactgaagatgaatgagtacTTGTTCTGAGCACGCACACTATTATTTACTCACAGCAGACTAAGTTAGCCTCACCCctagctatatacagtatatcaactGGCCTTATCAAAGCTGTCTCAGCGGTATAGCTGTCTTAACCATCCCTGTGTGCCCCCTCTGGACAAATCCAGTTCTCATCCAAAGTAGCCTCACCTGCGGATGAAACCTCCGCTGATGGCCATCTGTTCCCGCTCATCAACCACACGGGCAGGCTGGCTGTTCACGACACCATCCTGGTTGTTGCCCCAGGCCTTGCTGCCTCCACTCTTCATTCTGCATGAATCATGAAGAACATAAGCGCCAAGGTGGCCTGAGAGCCTCCATATGACCAgtgtttccacccacacacactagcaACAGTGGACAAATGCTGGACTAACAGGCAGGCAGTAACAGGCATAACCAAATCAGTTCTAGCTGAAATGTTAGGCCTTGCTGACATATAACATACATGGCTTGTTGGCTAAAACACATACCTTTGTTTAACAGATGAAAAAACAAGGGGAAACTAGCTAGCAACAGAAATCTGGGACTCAGAGGTCATCAGTGCATTACTTCTTGTTGGACTGCTTCCCCTTCCCAGTGATAATGGCTTGTTTCCCTATCTCTaattataacaaataacaaagaaGACAGGCCATGGCAGACAGACAACACAGAATAACAGGACTGCCACACTGTCAGAGACAAGTGCAAAcaactgcaaaagaaaagaaactggaGGGACGAGAACCCATTCCTAGGCCACCATTTTAATTTGGGCTTCACTGGTAAAATGTTTTCGCCTTGTTTACAGTAGTGATATTTATGGTTGGTGATTATTATAACGTTGACCATTTTAGCTCGGCATATAACAGGGAACGAACTAATTATATTAAGTTTTGTCTCTACGGTATGATTAGTATAGTATTAGATGCCACAAATCCTTCAGAAAATTTACACTGATTGAGAATGATCAAATTTAGATCACCTAAACTTTGTTTACTCTCGTTCTGTTCCATCCGTTATATGAACATCTGTCATCCTCCTAAAGTGCAATCTAGTTTAGCATCGTTTGTCTAAAATGAGCCAGAACATTTATCTCTGGGATTGTTCACATGGATAAATACTGTTATCAGGGATCCAGATCTTGAAGCTAAGCTGAGAAAAAGCTAGACTGCCCACTGCAGCGTTATTTATATTCTCCACCATCTAACTATCTTGGCAGTGTGTTtagctttatttaatgttgcagGCTAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341802 lncRNA upstream 53195 2448422 ~ 2453374 (+) True G288581
TU341720 lncRNA upstream 180280 2325658 ~ 2326289 (+) True G288512
TU341667 lncRNA upstream 287931 2215577 ~ 2218638 (+) True G288461
XR_004580150.1 lncRNA upstream 355331 2147215 ~ 2151238 (+) True LOC117599781
TU341415 lncRNA upstream 435293 2071034 ~ 2071276 (+) True G288242
TU341983 lncRNA downstream 70895 2581309 ~ 2608373 (+) True G288734
TU341993 lncRNA downstream 117344 2627758 ~ 2628318 (+) True G288740
TU342050 lncRNA downstream 253856 2764270 ~ 2765055 (+) True G288789
TU342114 lncRNA downstream 359182 2869596 ~ 2916810 (+) True G288834
TU342116 lncRNA downstream 359948 2870362 ~ 2870666 (+) True G288836
XM_026946818.2 mRNA upstream 10716 2485036 ~ 2495853 (+) False cnstb
XM_026946819.2 mRNA upstream 10716 2485036 ~ 2495853 (+) False cnstb
XM_026946966.2 mRNA upstream 31966 2454793 ~ 2474603 (+) True kif26bb
XM_026946967.2 mRNA upstream 35657 2454793 ~ 2470912 (+) False kif26bb
XM_026947002.2 mRNA upstream 67529 2436698 ~ 2439040 (+) True lft1
XM_026946998.2 mRNA downstream 101787 2612201 ~ 2618880 (+) False stmn4
XM_026947000.2 mRNA downstream 101907 2612321 ~ 2618880 (+) False stmn4
XM_026946999.2 mRNA downstream 102086 2612500 ~ 2618880 (+) True stmn4
XM_026946958.2 mRNA downstream 129866 2640280 ~ 2644268 (+) True paqr8
XM_026946959.2 mRNA downstream 129866 2640280 ~ 2644268 (+) False paqr8
TU341918 other upstream 10517 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 364932 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 497763 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1147207 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1241937 1259176 ~ 1264632 (+) False LOC117599677
XR_003404755.1 other downstream 854864 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 857234 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1433081 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1477638 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 1553221 4063635 ~ 4069715 (+) False G289531

Expression Profile