Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU341993 |
| length | 541 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G288740 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 2627758 ~ 2628318 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU341983 | lncRNA | upstream | 19385 | 2581309 ~ 2608373 (+) | True | G288734 |
| TU341932 | lncRNA | upstream | 112383 | 2506569 ~ 2515375 (+) | True | G288694 |
| TU341934 | lncRNA | upstream | 117344 | 2506569 ~ 2510414 (+) | False | G288694 |
| TU341802 | lncRNA | upstream | 174384 | 2448422 ~ 2453374 (+) | True | G288581 |
| TU341720 | lncRNA | upstream | 301469 | 2325658 ~ 2326289 (+) | True | G288512 |
| TU342050 | lncRNA | downstream | 135952 | 2764270 ~ 2765055 (+) | True | G288789 |
| TU342114 | lncRNA | downstream | 241278 | 2869596 ~ 2916810 (+) | True | G288834 |
| TU342116 | lncRNA | downstream | 242044 | 2870362 ~ 2870666 (+) | True | G288836 |
| TU342119 | lncRNA | downstream | 350015 | 2978333 ~ 2980205 (+) | True | G288839 |
| TU342216 | lncRNA | downstream | 563789 | 3192107 ~ 3193930 (+) | True | G288927 |
| XM_026946998.2 | mRNA | upstream | 8878 | 2612201 ~ 2618880 (+) | False | stmn4 |
| XM_026947000.2 | mRNA | upstream | 8878 | 2612321 ~ 2618880 (+) | False | stmn4 |
| XM_026946999.2 | mRNA | upstream | 8878 | 2612500 ~ 2618880 (+) | True | stmn4 |
| XM_026946818.2 | mRNA | upstream | 131905 | 2485036 ~ 2495853 (+) | False | cnstb |
| XM_026946819.2 | mRNA | upstream | 131905 | 2485036 ~ 2495853 (+) | False | cnstb |
| XM_026946958.2 | mRNA | downstream | 11962 | 2640280 ~ 2644268 (+) | True | paqr8 |
| XM_026946959.2 | mRNA | downstream | 11962 | 2640280 ~ 2644268 (+) | False | paqr8 |
| XM_026946825.2 | mRNA | downstream | 17755 | 2646073 ~ 2654271 (+) | True | LOC113546789 |
| XM_026946828.2 | mRNA | downstream | 28451 | 2656769 ~ 2664965 (+) | True | znf395b |
| XM_034313454.1 | mRNA | downstream | 28875 | 2657193 ~ 2664965 (+) | False | znf395b |
| TU341918 | other | upstream | 131706 | 2489677 ~ 2496052 (+) | True | cnstb |
| XR_004580079.1 | other | upstream | 486121 | 2133158 ~ 2141637 (+) | False | LOC113546780 |
| TU341376 | other | upstream | 618952 | 1996797 ~ 2008806 (+) | False | ptchd4 |
| TU341023 | other | upstream | 1268396 | 1358186 ~ 1359362 (+) | False | srp9 |
| XR_004580082.1 | other | upstream | 1363126 | 1259176 ~ 1264632 (+) | False | LOC117599677 |
| XR_003404755.1 | other | downstream | 736960 | 3365278 ~ 3365402 (+) | True | LOC113546887 |
| XR_003404754.1 | other | downstream | 739330 | 3367648 ~ 3367772 (+) | True | LOC113546886 |
| XR_004580118.1 | other | downstream | 1315177 | 3943495 ~ 3979785 (+) | False | ipo13 |
| trnad-guc_14 | other | downstream | 1359734 | 3988052 ~ 3988123 (+) | True | trnad-guc_14 |
| TU342966 | other | downstream | 1435317 | 4063635 ~ 4069715 (+) | False | G289531 |
