RNA id: TU342502


Basic Information

Item Value
RNA id TU342502
length 1817
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G289145
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3364238 ~ 3369854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaaatTTAAAAGACTTGGACAGCAAGGATTACAGAGTAGCGAATTTGGATTTAGTTGTGGCATTAATCCAGATTTATGTATCATCATCATATAACATGATGTAAGTTTAACtcgttataaaatatttaatttcacaaggcgttgttattaaatatgaacagaAACACAGGACAGATATGTTGAACTTTTCCTATATCCTCTATAAGCCTCTATAAGTATTGGCGCTACGGCCacagtgcgcatgcgcacaacCCACAATTCATTTCTTCCTCGTGTCTCTTCTGCAGGACTTCCTGAACGTGGTCTTTCTCGTCTGTGTGCTGGAAGAGTGAGGTTAGATGAGTGTCAGACTGAAACACCCAGTTAGAAAAGAGGACAAAACCTCAGCAGGAGCTGAAAGGGAACGCATGAGCTGAGAAAATAAGATGATGTGCCGTGTCGAGGATCCAGGTACTGCGGTTGTTTCCTGAAGTAAAGACGAGCAGCGTGTCTACATACAGCACAGACACGTTTTTATCCGCCCTTACATCTGAACTTGTTTTGGTGTTGACTGCAATGTCTttacaaatttgtaaaattggttgtcagatcttttctgtgaagtaaataaagaataataatgtggaaaaataatgtgtgtatgtactgtcCCGTGTCATACTCAGTGTTCGTATCCAACTTTTGATGCATGTCAACTACATCCAGTTTGTTTCAGAGGTATATACAGGACTAACAACCAATGTAAAGTTGCTTAGAATTGAGTCTGTGCTGCttttctgtgtatgtatattaacAGCTTGGTTACGTGGCTATTATTAggctgcattcgacttaccaCATAAGTGAGATGTCTGAACTTGGAATTACATAATTTTAAACCTTTGTGTTCGAGCTTCAAAGTAGGGgtgaaaaacatggatgcctcttGGGCAGATTATTCAAAAGCATGGTCTGGGTTATCATTGCTATGCAGCTGATACCCAGATTTAAATTAGTACTCAACCTGATGTTACATCAGCACTTTCAACTTTATCTGCTTGTTTACTGGAAATACAGACAGATGAAACAGAACTTCCTACAGATAACTGTTTAAAAactgtgtgatgtttgatgCACAGCTGACTTAACACTCATTTCAAGAATGTTactaaagtagctttttatcaTCTTCGGAATATTGCACGTATAAGACCGTTTCTCTCTATGCCTGATGCAGAAAGGCTTATTCATGTCTTTATAACATCTAGGCTTGATTATTGTAATTCACTTTTTGCAGGGTTACCTGCAAATTTGATTAAGAGGCTGCAATATGTGCAAAATTCAGCTGCTTGTGTTTTATCTTACACACCATCCCGTAGTCATATCACTCCTGTGCTTTCTAAACTACACTGGCTTCCAGTTCAATCACGTATTGATTTTAAAGTTCTTATCTTAACTTATAAAGCAGTATATGGGCTGGCCCCAGAGTATATTTGTAATTTGGTCTCAGTGTCCAcaccatctctgtctctccgcTCTGCTGGTTCTTACTCTGTACCAGCCTCGCTGTAAACTCAAAACTTTGGGTGGGAGGTCATTCTCTTGTACTGCTCCGAGGTTGTGGAATTCTCTGCCTCTTCCTATTAGAAATGCTCCGTcttttgattgttttaagaAATTACTCAAAACATATCTCTTTAGTGAAGCTTTTAAGTTATAATCTTacagttgttgttgtcattgttgttattgtgttgtcATTGTGATTACTATTATGgagttgtgttttttcttttgttgtgttATACTGTTGTAGCACCTTGAGTGTAAGAAAGgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342480 lncRNA upstream 20494 3341401 ~ 3343744 (+) True G289134
TU342467 lncRNA upstream 75697 3279406 ~ 3288541 (+) True G289121
TU342216 lncRNA upstream 170308 3192107 ~ 3193930 (+) True G288927
TU342119 lncRNA upstream 384033 2978333 ~ 2980205 (+) True G288839
TU342116 lncRNA upstream 493572 2870362 ~ 2870666 (+) True G288836
TU342523 lncRNA downstream 13823 3383677 ~ 3383882 (+) True G289164
TU342605 lncRNA downstream 124097 3493951 ~ 3494334 (+) True G289240
TU342751 lncRNA downstream 253210 3623064 ~ 3687916 (+) True G289351
TU342764 lncRNA downstream 340847 3710701 ~ 3739214 (+) True G289363
TU342784 lncRNA downstream 473261 3843115 ~ 3844679 (+) True G289378
XM_026946968.2 mRNA upstream 49775 3305053 ~ 3314463 (+) True spata18
XM_026946945.2 mRNA upstream 86270 3263947 ~ 3277968 (+) True dcun1d4
XM_034313815.1 mRNA upstream 86270 3263994 ~ 3277968 (+) False dcun1d4
XM_034313814.1 mRNA upstream 86270 3266882 ~ 3277968 (+) False dcun1d4
XM_026946830.2 mRNA upstream 102188 3258173 ~ 3262050 (+) True ociad2
XM_026946820.2 mRNA downstream 29261 3399115 ~ 3402675 (+) True rasl11b
XM_026946854.2 mRNA downstream 184883 3554737 ~ 3585005 (+) True fip1l1a
XM_026946855.2 mRNA downstream 184883 3554737 ~ 3585005 (+) False fip1l1a
XM_026946856.2 mRNA downstream 184883 3554737 ~ 3585005 (+) False fip1l1a
XM_026946969.2 mRNA downstream 348252 3718106 ~ 3720488 (+) True gsx2
TU341918 other upstream 868186 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1222601 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1355432 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 2004876 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 2099606 1259176 ~ 1264632 (+) False LOC117599677
XR_004580118.1 other downstream 573641 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 618198 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 693781 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 957617 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 958978 4328832 ~ 4328903 (+) False trnad-guc_17