RNA id: TU342523


Basic Information

Item Value
RNA id TU342523
length 206
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G289164
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3383677 ~ 3383882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgattctcaagaaggcaacacgatatATTAAGGGGGTGTAGCTTCGGAAGGGCaacactaaatgaaaaaaaaacaaaaaacaaaaacttaatGTATCGTGCTACCTTCTTTAGCATCAcggaatgtttgcaccttttgtaatagttgtgtacgagtccctcagctgtcctcagtacgaaaagatggatctcaacatcatatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342493 lncRNA upstream 13823 3364238 ~ 3369854 (+) False G289145
TU342495 lncRNA upstream 13823 3364238 ~ 3369854 (+) False G289145
TU342497 lncRNA upstream 13823 3364238 ~ 3369854 (+) False G289145
TU342498 lncRNA upstream 13823 3364238 ~ 3369854 (+) False G289145
TU342499 lncRNA upstream 13823 3364238 ~ 3369854 (+) False G289145
TU342605 lncRNA downstream 110069 3493951 ~ 3494334 (+) True G289240
TU342751 lncRNA downstream 239182 3623064 ~ 3687916 (+) True G289351
TU342764 lncRNA downstream 326819 3710701 ~ 3739214 (+) True G289363
TU342784 lncRNA downstream 459233 3843115 ~ 3844679 (+) True G289378
TU342935 lncRNA downstream 558392 3942274 ~ 3974015 (+) True G289515
XM_026946968.2 mRNA upstream 69214 3305053 ~ 3314463 (+) True spata18
XM_026946945.2 mRNA upstream 105709 3263947 ~ 3277968 (+) True dcun1d4
XM_034313815.1 mRNA upstream 105709 3263994 ~ 3277968 (+) False dcun1d4
XM_034313814.1 mRNA upstream 105709 3266882 ~ 3277968 (+) False dcun1d4
XM_026946830.2 mRNA upstream 121627 3258173 ~ 3262050 (+) True ociad2
XM_026946820.2 mRNA downstream 15233 3399115 ~ 3402675 (+) True rasl11b
XM_026946854.2 mRNA downstream 170855 3554737 ~ 3585005 (+) True fip1l1a
XM_026946855.2 mRNA downstream 170855 3554737 ~ 3585005 (+) False fip1l1a
XM_026946856.2 mRNA downstream 170855 3554737 ~ 3585005 (+) False fip1l1a
XM_026946969.2 mRNA downstream 334224 3718106 ~ 3720488 (+) True gsx2
XR_003404754.1 other upstream 15905 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 18275 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 887625 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1242040 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1374871 1996797 ~ 2008806 (+) False ptchd4
XR_004580118.1 other downstream 559613 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 604170 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 679753 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 943589 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 944950 4328832 ~ 4328903 (+) False trnad-guc_17

Expression Profile