RNA id: TU342605


Basic Information

Item Value
RNA id TU342605
length 204
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G289240
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3493951 ~ 3494334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttactgactgacttacAGACTGACTGGCttacttactgactgactgactgactgactgatttaCTCACTTAcagaattaattatttactgactgactgattacTGAGTCCGTAATGCTTGACCTGGTTAAtgcacatttccttttattCAAACTGAAACAAATCACTAAACTCACAGTTCTGACacctgtccttttgtgtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342523 lncRNA upstream 110069 3383677 ~ 3383882 (+) True G289164
TU342499 lncRNA upstream 124097 3364238 ~ 3369854 (+) False G289145
TU342751 lncRNA downstream 128730 3623064 ~ 3687916 (+) True G289351
TU342764 lncRNA downstream 216367 3710701 ~ 3739214 (+) True G289363
TU342784 lncRNA downstream 348781 3843115 ~ 3844679 (+) True G289378
TU342935 lncRNA downstream 447940 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA downstream 453862 3948196 ~ 3948458 (+) True G289517
XM_026946820.2 mRNA upstream 91276 3399115 ~ 3402675 (+) True rasl11b
XM_026946968.2 mRNA upstream 179488 3305053 ~ 3314463 (+) True spata18
XM_026946945.2 mRNA upstream 215983 3263947 ~ 3277968 (+) True dcun1d4
XM_034313815.1 mRNA upstream 215983 3263994 ~ 3277968 (+) False dcun1d4
XM_034313814.1 mRNA upstream 215983 3266882 ~ 3277968 (+) False dcun1d4
XM_026946854.2 mRNA downstream 60403 3554737 ~ 3585005 (+) True fip1l1a
XM_026946855.2 mRNA downstream 60403 3554737 ~ 3585005 (+) False fip1l1a
XM_026946856.2 mRNA downstream 60403 3554737 ~ 3585005 (+) False fip1l1a
XM_026946969.2 mRNA downstream 223772 3718106 ~ 3720488 (+) True gsx2
XM_026946932.2 mRNA downstream 237308 3731642 ~ 3753431 (+) True pdgfra
XR_003404754.1 other upstream 126179 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 128549 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 997899 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1352314 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1485145 1996797 ~ 2008806 (+) False ptchd4
XR_004580118.1 other downstream 449161 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 493718 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 569301 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 833137 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 834498 4328832 ~ 4328903 (+) False trnad-guc_17

Expression Profile