RNA id: TU342784


Basic Information

Item Value
RNA id TU342784
length 1545
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G289378
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3843115 ~ 3844679 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacatgcacacacacataaacacacacacacatacagtacattagaaaATAACTTTGAGCGCATTGTCTCTTCAAGGTCATTGCAAAACAGATACAGGAAGAGAGGAGTCTCATAACCTGAttcacacacccaaacactggcgtgcacacacacacgcacacacacacacacacacacacacacacacacacacacacggtcctTTATACTCTGCCTTTAAAATTTTTCAAAAGAGATGTAACTGAAGATAACAAATTCTGACAACTACATTTAGTAGAAATATTTTcgataaaagtttattttagaaAACTAGTTATGTTTAGGAcaagtttaataaaatacatcGTTCTTACGTAACCTACATTAAGGTCCTCCCTTAATAACCTGTACATTCAGGAAGCAAaccttgaaaaatgaaaagcataATGTAAAGAAGGACAAGAGGCAAGGAAAAGAACATTCGAGAGACATTGTTGCTCGTGATTTGATAAGATGCTGGCCAAATGTCAGaggaaaacaatacaaaacataaatacagacaaaaaaaaacattaggtcACTCAGAAAGTGACCAGAAAGTGGGTGTATCTTTTTACAGGAAGTGGGAGTGGTCTCAGTGAGCAGCTACTCTTGCTCTGCAGTCTGTGTAAACAATGATTACATTTCCAAAGCTTTCTCCAAAAAGTGTGACctttaaatcaattaaaatgaatgcatttaCAGCAAAGCAGACACATACAGCTTATCTGCACCcacaaaatatattacatttttttttttttttattgaagggAGGAAATAAAATAGACATGGTCATTTGTGTGATAAATTAGAACTCTGCATGAGTGTTTCACATGCATAAATTGCAAGATAAATAGAAATGAATTGTAGGTTTCAGCTAAGGCACAGTGGTCAGTTGAATGCTATATGTTATGTGTGTTATACTCAGTGATTATAATTTCAAATCTCAACATACAGTTACAGGCATGTGCATGCAGCACTTTAGTGTTAAGGAGATTTACTGACTTTAATAAATGTACCTGActaaatcatattaaataaaaactatagaGAAAACTATAATGCCACTGATCAAGAGAATGTGAGGAGAGCTGTGCTTAAATCAAATAACTGCTTTGTAGCATGGACTAGAATCTCTGGCTAAGCACCAACCTATCATAAGCAGAACCTTGTCTGTTTTTTATTGCTTTCGGTGAAAACGGGTGAGTCTGCTATTCCAGGCCGAAAGTTAAGAAAGACCAACACTTTGTATAGTCATATAGTTGTGGGTTTATGGGTGGTTCCTATTAAACAGGGGGAGTACTATAGCGGACCTCAGTGCTAAACTTGTCATCCCTCTTGGGGAATGGTGGCTTCTTCAAAATGTCCCTCTTCAGGATCATCTCTTCATTGGCATACACAGGCGCCTCTGTGTCATCCGAGTGGTAGCCCGACTGGTAGCCACTGGTCTGATTGGATGATTCAGATGCCACAGATTCCTTACTCTTACATCGTAGCAGGGGGCTGAGGGAAGAATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342764 lncRNA upstream 103901 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 155199 3623064 ~ 3687916 (+) True G289351
TU342605 lncRNA upstream 348781 3493951 ~ 3494334 (+) True G289240
TU342523 lncRNA upstream 459233 3383677 ~ 3383882 (+) True G289164
TU342502 lncRNA upstream 473261 3364238 ~ 3369854 (+) False G289145
TU342935 lncRNA downstream 97595 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA downstream 103517 3948196 ~ 3948458 (+) True G289517
TU342945 lncRNA downstream 140068 3984747 ~ 4350564 (+) True G289522
TU342978 lncRNA downstream 202530 4047209 ~ 4055985 (+) True G289533
TU342965 lncRNA downstream 209778 4054457 ~ 4069715 (+) False G289531
XM_026946915.2 mRNA upstream 34366 3781390 ~ 3808749 (+) True kita
XM_026946916.2 mRNA upstream 34366 3781390 ~ 3808749 (+) False kita
XM_026946917.2 mRNA upstream 34366 3781390 ~ 3808749 (+) False kita
XM_026946932.2 mRNA upstream 89684 3731642 ~ 3753431 (+) True pdgfra
XM_026946931.2 mRNA upstream 92021 3733913 ~ 3751094 (+) False pdgfra
XM_034313897.1 mRNA downstream 34143 3878822 ~ 3885661 (+) True LOC117599795
XM_026946996.2 mRNA downstream 52336 3897015 ~ 3901866 (+) False mgst3a
XM_026946994.2 mRNA downstream 52346 3897025 ~ 3901866 (+) False mgst3a
XM_026946993.2 mRNA downstream 52348 3897027 ~ 3901866 (+) True mgst3a
XM_026946995.2 mRNA downstream 52359 3897038 ~ 3901866 (+) False mgst3a
XR_003404754.1 other upstream 475343 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 477713 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1347063 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1701478 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1834309 1996797 ~ 2008806 (+) False ptchd4
XR_004580118.1 other downstream 98816 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 143373 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 218956 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 482792 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 484153 4328832 ~ 4328903 (+) False trnad-guc_17

Expression Profile