Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU342935 |
| length | 325 |
| lncRNA type | sense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G289515 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 3942274 ~ 3974015 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU342784 | lncRNA | upstream | 97595 | 3843115 ~ 3844679 (+) | True | G289378 |
| TU342764 | lncRNA | upstream | 203060 | 3710701 ~ 3739214 (+) | True | G289363 |
| TU342751 | lncRNA | upstream | 254358 | 3623064 ~ 3687916 (+) | True | G289351 |
| TU342605 | lncRNA | upstream | 447940 | 3493951 ~ 3494334 (+) | True | G289240 |
| TU342523 | lncRNA | upstream | 558392 | 3383677 ~ 3383882 (+) | True | G289164 |
| TU342945 | lncRNA | downstream | 10732 | 3984747 ~ 4350564 (+) | True | G289522 |
| TU342978 | lncRNA | downstream | 73194 | 4047209 ~ 4055985 (+) | True | G289533 |
| TU342965 | lncRNA | downstream | 80442 | 4054457 ~ 4069715 (+) | False | G289531 |
| TU342967 | lncRNA | downstream | 80442 | 4054457 ~ 4070367 (+) | True | G289531 |
| TU342971 | lncRNA | downstream | 80442 | 4054457 ~ 4069715 (+) | False | G289531 |
| XM_034313657.1 | mRNA | upstream | 25194 | 3905694 ~ 3917080 (+) | True | LOC113546823 |
| XM_026946899.2 | mRNA | upstream | 25194 | 3905792 ~ 3917080 (+) | False | LOC113546823 |
| XM_026946996.2 | mRNA | upstream | 40408 | 3897015 ~ 3901866 (+) | False | mgst3a |
| XM_026946994.2 | mRNA | upstream | 40408 | 3897025 ~ 3901866 (+) | False | mgst3a |
| XM_026946993.2 | mRNA | upstream | 40408 | 3897027 ~ 3901866 (+) | True | mgst3a |
| XM_026946977.2 | mRNA | downstream | 17652 | 3991667 ~ 4016550 (+) | True | pfas |
| XM_026946956.2 | mRNA | downstream | 50667 | 4024682 ~ 4045273 (+) | True | hook1 |
| XM_026946957.2 | mRNA | downstream | 50667 | 4024682 ~ 4045273 (+) | False | hook1 |
| XM_034313865.1 | mRNA | downstream | 50873 | 4024888 ~ 4045273 (+) | False | hook1 |
| XM_034313866.1 | mRNA | downstream | 50873 | 4024888 ~ 4045273 (+) | False | hook1 |
| XR_003404754.1 | other | upstream | 574502 | 3367648 ~ 3367772 (+) | True | LOC113546886 |
| XR_003404755.1 | other | upstream | 576872 | 3365278 ~ 3365402 (+) | True | LOC113546887 |
| TU341918 | other | upstream | 1446222 | 2489677 ~ 2496052 (+) | True | cnstb |
| XR_004580079.1 | other | upstream | 1800637 | 2133158 ~ 2141637 (+) | False | LOC113546780 |
| TU341376 | other | upstream | 1933468 | 1996797 ~ 2008806 (+) | False | ptchd4 |
| trnad-guc_14 | other | downstream | 14037 | 3988052 ~ 3988123 (+) | True | trnad-guc_14 |
| TU342966 | other | downstream | 89620 | 4063635 ~ 4069715 (+) | False | G289531 |
| trnad-guc_16 | other | downstream | 353456 | 4327471 ~ 4327542 (+) | True | trnad-guc_16 |
| trnad-guc_17 | other | downstream | 354817 | 4328832 ~ 4328903 (+) | False | trnad-guc_17 |
| trnad-guc_18 | other | downstream | 359543 | 4333558 ~ 4333629 (+) | True | trnad-guc_18 |
