RNA id: TU342945


Basic Information

Item Value
RNA id TU342945
length 318
lncRNA type read_through
GC content 0.44
exon number 2
gene id G289522
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3984747 ~ 4350564 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGCGAAGTGAATTATTCTTATAATACTACAGCATTCAAATACATCCTACATAAATTctgacatcctgtacaattgtgcgcttccaactttgaggcaacagtttggggaagaagcacatatgggggtgtgatggtcaggtttccacaaacttttggtcatatagtgtatattgggGATATCAGCCTATGTAttgatgtgtaaatgtgttgtgATGATGAGTTGTAGTAGAGGTAGAGTAAGGTGAGAAAAGCAGTGTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342935 lncRNA upstream 10732 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA upstream 36289 3948196 ~ 3948458 (+) True G289517
TU342784 lncRNA upstream 140068 3843115 ~ 3844679 (+) True G289378
TU342764 lncRNA upstream 245533 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 296831 3623064 ~ 3687916 (+) True G289351
XR_004580081.1 lncRNA downstream 184 4350748 ~ 4352801 (+) True LOC117599675
TU343335 lncRNA downstream 82671 4433235 ~ 4434790 (+) True G289831
TU343392 lncRNA downstream 179364 4529928 ~ 4539840 (+) True G289866
TU343408 lncRNA downstream 256804 4607368 ~ 4608750 (+) False LOC113545190
XR_004580080.1 lncRNA downstream 273578 4624142 ~ 4627837 (+) True LOC117599674
XM_026946901.2 mRNA upstream 2053 3943497 ~ 3982694 (+) True ipo13
XM_026946902.2 mRNA upstream 8007 3943494 ~ 3976740 (+) False ipo13
XM_034313657.1 mRNA upstream 67667 3905694 ~ 3917080 (+) True LOC113546823
XM_026946899.2 mRNA upstream 67667 3905792 ~ 3917080 (+) False LOC113546823
XM_026946993.2 mRNA upstream 82881 3897027 ~ 3901866 (+) True mgst3a
XM_026944622.2 mRNA downstream 16201 4366765 ~ 4396120 (+) True LOC113545323
XM_034313494.1 mRNA downstream 57204 4407768 ~ 4419833 (+) False LOC113545214
XM_026944426.2 mRNA downstream 57204 4407768 ~ 4419833 (+) False LOC113545214
XM_034313496.1 mRNA downstream 57204 4407768 ~ 4419833 (+) False LOC113545214
XM_034313495.1 mRNA downstream 58201 4408765 ~ 4419833 (+) True LOC113545214
XR_004580118.1 other upstream 4962 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 616975 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 619345 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1488695 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1843110 2133158 ~ 2141637 (+) False LOC113546780
XR_004580098.1 other downstream 591387 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 591387 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 591387 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 591388 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1384909 5735473 ~ 5801693 (+) True usp24

Expression Profile