RNA id: TU342961


Basic Information

Item Value
RNA id TU342961
length 1687
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G289530
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4061818 ~ 4073966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATAATAACTTTCGGAGTGGCCACTTACCCTTTTCTGCTTTGAAAGCTTCACACAGAAAGATGCTCTCCTGCTGGATACTCAGCTCTAAGGCCTTCCTCCCTTCACCAAAGTGGCGTAGGTGTGTGACGATAAACTTCCTCTGGTTTTTCCACAGGTACCCATTACTGAGAGCTACACCTTCAGAGCATGGCACAGCAAGCCTCAGttagattatatttatattaaaaaaagattagatgtaatgcatgtaaaatatttcatacagtACCAATCTTGAGTATTAGAAATGCTTGAATGCTATTTAGTTTCTTTATtatagctcttgggtttttcaaCATGACATGTTGGGTTAAATAAACAACCCATTTTGCTAGGCTAAATTAAtccagtgtgtgttatattcAATAGTTGCCCAGccacatggttaaaaaaaaaaacaacaaaacaactcatattgtatttttttaacccAGACATTTTTGGAGTGTACAAACTTTATGATATATATATCAAACACCCATTAGGTCATCAAagtactgttcttttttttaaaggaaattatCAGGATAATTTGGTATCAAAGACAATCATTTGtaataatgctgaaaaaaatacagtatttattaactGAGAAAAGTACATGCCCCACcccatatattattattattttacttgcCTAGTCCCTTAAAGATTTTGTGAAAGAGAGGGACAACAGGACGGTCTGCAAAGCTGTCCAGCTGAGTAACGAGAGCCTCCTTCACCATTTTATGTCCAGAGATAAACACAGTTTTCTCACTGCCCCAGCGCAGGCTGAAAACATCTCCGTACTTCTCAGCAAGCTTAGTTTAAATACATACAAGTAATGGAGAAAAGAGTGAAAGGTAGTGGTacagtgaaaaataataaaaaggaaaaaaaaaattaaaagattttgAACCGTtcatatattttacacattttctataCATGTATTACAAAACATGTAAGTTCTTTCATTTCTGGCTATAATtggtaagaaaataaaaatatagttgTTCTACTCAAGACTTtctaatgattaaaaacaaacaaacaaacaaacaaagaaaatgtcaaaatggtCTTTTAGCCTACCTTGTCTATTGTTTTGAAGTTAAGCTCAGTGAAAATGTTTCCCACAAAAGGTAGGggccatggtcctggaggaaaaTTGGATGGATTTTTATTCCTGATGATATCAAGAAGtagcaggaaaagaaaaaatcctATAAGCCAGCTCTTAAAATCAAGGTATTCCACTAAATTGTATAaaaacattgctgtggtatgtcTGCTCCTGTATGCGAAGGTTTGTGTACTTTGTGTCCTCTTGAACTGTGCCAAACTGTAGCAGAGGGAAGAGATTATATAAGCCGATCTGAAATCCTAGATAtgcttaacaaaaaaaaaaacaaaagtttcctcttcactgtgttttttccccacttcctTTACTGCTAGGCTTCTTACACAGTatttacacccacacacacacacacagaaaccactttattaggaacactagactaatactgggtagggtctccctttgctctcagaacagcctcaataCTTCATGTCATGGATTCCACAAGTTGTCataaacattcctttgagattctggtccatgttgacatgattgtattacataattgctgcagatgtG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342978 lncRNA upstream 5833 4047209 ~ 4055985 (+) True G289533
TU342935 lncRNA upstream 87803 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA upstream 113360 3948196 ~ 3948458 (+) True G289517
TU342784 lncRNA upstream 217139 3843115 ~ 3844679 (+) True G289378
TU342764 lncRNA upstream 322604 3710701 ~ 3739214 (+) True G289363
XR_004580146.1 lncRNA downstream 165060 4239026 ~ 4243951 (+) True LOC117599777
TU343070 lncRNA downstream 174633 4248599 ~ 4279496 (+) False clocka
TU343078 lncRNA downstream 191417 4265383 ~ 4334959 (+) True G289615
TU343083 lncRNA downstream 245495 4319461 ~ 4330272 (+) True G289619
TU343090 lncRNA downstream 254882 4328848 ~ 4338299 (+) True trnad-guc_17
XM_026946956.2 mRNA upstream 16545 4024682 ~ 4045273 (+) True hook1
XM_026946957.2 mRNA upstream 16545 4024682 ~ 4045273 (+) False hook1
XM_034313865.1 mRNA upstream 16545 4024888 ~ 4045273 (+) False hook1
XM_034313866.1 mRNA upstream 16545 4024888 ~ 4045273 (+) False hook1
XM_026946977.2 mRNA upstream 45268 3991667 ~ 4016550 (+) True pfas
XM_026944441.2 mRNA downstream 27703 4101669 ~ 4115455 (+) True ppat
XM_026944445.2 mRNA downstream 50092 4124058 ~ 4137561 (+) True aasdh
XM_026944446.2 mRNA downstream 53335 4127301 ~ 4137561 (+) False aasdh
XM_034313506.1 mRNA downstream 102565 4176531 ~ 4196440 (+) False cep135
XM_034313504.1 mRNA downstream 102567 4176533 ~ 4196439 (+) True cep135
trnad-guc_14 other upstream 73695 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 82033 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 694046 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 696416 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1565766 2489677 ~ 2496052 (+) True cnstb
trnad-guc_16 other downstream 253505 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 254866 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 259592 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 263937 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_22 other downstream 275842 4349808 ~ 4349879 (+) True trnad-guc_22

Expression Profile