Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU342978 |
| length | 601 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G289533 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 4047209 ~ 4055985 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| id | description |
|---|---|
| ko00380 | Tryptophan metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU342935 | lncRNA | upstream | 73194 | 3942274 ~ 3974015 (+) | True | G289515 |
| TU342939 | lncRNA | upstream | 98751 | 3948196 ~ 3948458 (+) | True | G289517 |
| TU342784 | lncRNA | upstream | 202530 | 3843115 ~ 3844679 (+) | True | G289378 |
| TU342764 | lncRNA | upstream | 307995 | 3710701 ~ 3739214 (+) | True | G289363 |
| TU342751 | lncRNA | upstream | 359293 | 3623064 ~ 3687916 (+) | True | G289351 |
| TU342977 | lncRNA | downstream | 4759 | 4060744 ~ 4066425 (+) | True | G289532 |
| TU342961 | lncRNA | downstream | 5833 | 4061818 ~ 4073966 (+) | True | G289530 |
| TU342957 | lncRNA | downstream | 6779 | 4062764 ~ 4073966 (+) | False | G289530 |
| TU342963 | lncRNA | downstream | 6779 | 4062764 ~ 4068040 (+) | False | G289530 |
| XR_004580146.1 | lncRNA | downstream | 183041 | 4239026 ~ 4243951 (+) | True | LOC117599777 |
| XM_026946956.2 | mRNA | upstream | 1936 | 4024682 ~ 4045273 (+) | True | hook1 |
| XM_026946957.2 | mRNA | upstream | 1936 | 4024682 ~ 4045273 (+) | False | hook1 |
| XM_034313865.1 | mRNA | upstream | 1936 | 4024888 ~ 4045273 (+) | False | hook1 |
| XM_034313866.1 | mRNA | upstream | 1936 | 4024888 ~ 4045273 (+) | False | hook1 |
| XM_026946977.2 | mRNA | upstream | 30659 | 3991667 ~ 4016550 (+) | True | pfas |
| XM_026944441.2 | mRNA | downstream | 45684 | 4101669 ~ 4115455 (+) | True | ppat |
| XM_026944445.2 | mRNA | downstream | 68073 | 4124058 ~ 4137561 (+) | True | aasdh |
| XM_026944446.2 | mRNA | downstream | 71316 | 4127301 ~ 4137561 (+) | False | aasdh |
| XM_034313506.1 | mRNA | downstream | 120546 | 4176531 ~ 4196440 (+) | False | cep135 |
| XM_034313504.1 | mRNA | downstream | 120548 | 4176533 ~ 4196439 (+) | True | cep135 |
| trnad-guc_14 | other | upstream | 59086 | 3988052 ~ 3988123 (+) | True | trnad-guc_14 |
| XR_004580118.1 | other | upstream | 67424 | 3943495 ~ 3979785 (+) | False | ipo13 |
| XR_003404754.1 | other | upstream | 679437 | 3367648 ~ 3367772 (+) | True | LOC113546886 |
| XR_003404755.1 | other | upstream | 681807 | 3365278 ~ 3365402 (+) | True | LOC113546887 |
| TU341918 | other | upstream | 1551157 | 2489677 ~ 2496052 (+) | True | cnstb |
| TU342966 | other | downstream | 7650 | 4063635 ~ 4069715 (+) | False | G289531 |
| trnad-guc_16 | other | downstream | 271486 | 4327471 ~ 4327542 (+) | True | trnad-guc_16 |
| trnad-guc_17 | other | downstream | 272847 | 4328832 ~ 4328903 (+) | False | trnad-guc_17 |
| trnad-guc_18 | other | downstream | 277573 | 4333558 ~ 4333629 (+) | True | trnad-guc_18 |
| trnad-guc_19 | other | downstream | 281918 | 4337903 ~ 4337974 (+) | True | trnad-guc_19 |
