RNA id: TU343070


Basic Information

Item Value
RNA id TU343070
length 897
lncRNA type sense_over
GC content 0.43
exon number 3
gene id clocka
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4248330 ~ 4309929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGTAACTCCAGTCAATCCAACGCAGGCGTCTGAACCAAAACAAGGAGCGCGAGATCCCCTCATGACGGCGAATAAACTGGGTGACAACACTAATCTGAGGACCTAGGCAAAAAGGAATCATTTCTGAAGTCATGACCTAAGACGAGTTTGCTGCTGACATGCGGTACATGTGCGCTCACCCTCCTTGGAAAACATTCAGATGCTACAGGGACCCACAGCACACTTGTGATCATTTTAAACCACAGCCTCTCTCCGATTTCTCAAAGCTCTCCTTACTACACGTGAAAAACTGACGCAAATCCACACTGACTCACAGCCCAAGTGGATTGTGGTGGACTTCATCCTGAGACGAGCTCCTCATTCTCACTTTGCGCGCAGGACTGGAGGTTGGTTTGGCTTCAAAATGAAACCGAGGCCACGTTCAGACCTGGTATCAACACCTGTCTCAGGTGATCTGGCGATCTGATTACAGGTGGACAGCTGAGACGGATAGCCATTAACACCTATTTTCATGCATCTTGAACGCTTCTCCAGTGATCATTTGTGATTGTTCTTCTTGAATAACATAGCTGACCAGGAGGTTCTTTAAAGTTATCAGTGAGGTGGGtagtaacaatttacattttgtactgttattattacatttagcTTTTATCTGACACACTACACGTTTTACTTGTACGTATTCTCACCACATTCCGTCCGTCTTGTGGCCACATTTATAAAAACCCCTTTTTTGTCATAGCAGATGACTTCCAAAGttgaaaataattaaacttTCCAGAAGAAATGCTGACAGacatcaagctttttttttttttaatcagcaagGCACTCTGGGTAGCAGTttttctgaaagtttttttttttaaatccatattTAGGCTTAAGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580146.1 lncRNA upstream 4648 4239026 ~ 4243951 (+) True LOC117599777
TU342961 lncRNA upstream 174633 4061818 ~ 4073966 (+) True G289530
TU342957 lncRNA upstream 174633 4062764 ~ 4073966 (+) False G289530
TU342967 lncRNA upstream 178232 4054457 ~ 4070367 (+) True G289531
TU342965 lncRNA upstream 178884 4054457 ~ 4069715 (+) False G289531
TU343083 lncRNA downstream 39965 4319461 ~ 4330272 (+) True G289619
TU343090 lncRNA downstream 49352 4328848 ~ 4338299 (+) True trnad-guc_17
TU342943 lncRNA downstream 66083 4345579 ~ 4363088 (+) True G289521
XR_004580081.1 lncRNA downstream 71252 4350748 ~ 4352801 (+) True LOC117599675
TU343335 lncRNA downstream 153739 4433235 ~ 4434790 (+) True G289831
XM_034313840.1 mRNA upstream 9678 4235827 ~ 4238921 (+) True nmu
XM_034313506.1 mRNA upstream 52159 4176531 ~ 4196440 (+) False cep135
XM_026944622.2 mRNA downstream 87269 4366765 ~ 4396120 (+) True LOC113545323
XM_034313494.1 mRNA downstream 128272 4407768 ~ 4419833 (+) False LOC113545214
XM_026944426.2 mRNA downstream 128272 4407768 ~ 4419833 (+) False LOC113545214
XM_034313496.1 mRNA downstream 128272 4407768 ~ 4419833 (+) False LOC113545214
XM_034313495.1 mRNA downstream 129269 4408765 ~ 4419833 (+) True LOC113545214
TU342966 other upstream 178884 4063635 ~ 4069715 (+) False G289531
trnad-guc_14 other upstream 260476 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 268814 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 880827 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 883197 3365278 ~ 3365402 (+) True LOC113546887
trnad-guc_16 other downstream 47975 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 49336 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 54062 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 58407 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_22 other downstream 70312 4349808 ~ 4349879 (+) True trnad-guc_22

Expression Profile