RNA id: TU343335


Basic Information

Item Value
RNA id TU343335
length 1556
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G289831
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4433235 ~ 4434790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCACGCCACATCCTatgtgttgctttaaaaaaaaaaaaaaaaaaaaaaaaagtttatgagGGGCCATGTACACTTGATGTGCATTTGGATAACAGACCAAAATGCTATAGAGTGTAGTCCAATTATACCCAAAGTGTGACAGCATGATTTTCTCACTTGTGGGGAAAAGGCTCAACGGCTTGTACTTTCTCTCCAAGTAGGTGCAAAACCTATCTACAGCAACATTTATTAAGTGTCATATTCACTAGAGGATCCAGCAGATTTCTGACATGGCTGGCAGttaattgaaaatatatttcatgcCACCTACAGACGCTTGCCATGTGTGGAAGGTACATGAATATAGCTATGTGAAATGTTAACTTTAGTAAAATTAATGTGACAGTCTGCAATTCAGATTCTTTTAAGAACGCTGCGTATGTAGACTATTTAATTTACAATGCATCCAATTGTAAACAAAGCTAATAACAGCTACAAAGGCAATTCAGGCAGGTGTTATAAGGCAACATGCCACACGGTTAAGTAGTGAGTTAGCCCATAAGTTGATCATTTCTTTGGTATCTCATATAGattcacacacaccagttaacatacactcaccatccactttaatagtaacacctgtatacctgcgcattcatgcagttatctaatcagccaattgtgttgcaacaacacaaagcaaaaaatcatgcagataatgaagaaaaaatgtgatctcagtgattgagtaagtgacagttctgtgggtggaaacaccttgttgataagagagatcagaggaaaatggccagattggttccaGCTGCCAGGGAgaatatagtaactcatataatcactctttacaactgtggtgagcagaaaagcatctcagcatgcacaaaacattgaacattgaggtggatggacttacaacagcagaagaccacactgggttgcACTCCTGACAGCCAAGAACAACAATGGGCACgaactcacccaaactggagaGCTGAAGAttagagaagaggaaaggaggaaaaagaaaaaaagataactgcatgcatgtgcaggtgttcctaataaagtggacagtgtatgtgtgtgtgtgtgtgtattcacacaAATGcagtatatttataaaaattttgCAATTTCCCGTGTACTTTCCCTGCAATATTCAAGTCTCTTATTCAAGTACATGGCCCCACATACTAAATGAGATTAAAGAAGGAAATACAGCATGAGAAAACACATAACCCCcgacagaaataaaacaaatgaaagcaaGTCTGAATGTTCAATGGCTTACAATTTGGACAAAGCAGGAAATCTTCCTTTTGGTAGCTTGCAAATGAACATCTCACTGAATTCTTCCCTTTACGTGACTTTTGTTCTCCCTGGCATGTCTGGCTGTTAAATATAGACATCCATACCCATTTTGGATCCAATGTCACAGACTGTTGCTAAGGTTAAAGAAGACTGTGTCTCACTAAGAGCTGTGCAGTAATGAGCAGTGAAGCCCACGGTTCAACACTGTCCTAAGTCTCTGACGCTCTTAAGACCTCATTAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342943 lncRNA upstream 70147 4345579 ~ 4363088 (+) True G289521
XR_004580081.1 lncRNA upstream 80434 4350748 ~ 4352801 (+) True LOC117599675
TU342945 lncRNA upstream 82671 3984747 ~ 4350564 (+) True G289522
TU343090 lncRNA upstream 94936 4328848 ~ 4338299 (+) True trnad-guc_17
TU343078 lncRNA upstream 98276 4265383 ~ 4334959 (+) True G289615
TU343392 lncRNA downstream 95138 4529928 ~ 4539840 (+) True G289866
TU343408 lncRNA downstream 172578 4607368 ~ 4608750 (+) False LOC113545190
XR_004580080.1 lncRNA downstream 189352 4624142 ~ 4627837 (+) True LOC117599674
XR_004580147.1 lncRNA downstream 269872 4704662 ~ 4798444 (+) False LOC113545162
TU343531 lncRNA downstream 296295 4731085 ~ 4731312 (+) True G289989
XM_026944692.2 mRNA upstream 880 4425634 ~ 4432355 (+) True echdc2
XM_034313494.1 mRNA upstream 13402 4407768 ~ 4419833 (+) False LOC113545214
XM_026944426.2 mRNA upstream 13402 4407768 ~ 4419833 (+) False LOC113545214
XM_034313496.1 mRNA upstream 13402 4407768 ~ 4419833 (+) False LOC113545214
XM_034313495.1 mRNA upstream 13402 4408765 ~ 4419833 (+) True LOC113545214
XM_026944565.2 mRNA downstream 12857 4447647 ~ 4450922 (+) True LOC113545289
XM_026944414.2 mRNA downstream 18526 4453316 ~ 4557487 (+) True ralgps2
XM_026944629.2 mRNA downstream 126371 4561161 ~ 4581781 (+) True fam20b
XM_026944392.2 mRNA downstream 166265 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA downstream 166265 4601055 ~ 4609601 (+) False LOC113545190
trnad-guc_22 other upstream 83356 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 95261 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 99606 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 104332 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 105693 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 507161 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 507161 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 507161 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 507162 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1300683 5735473 ~ 5801693 (+) True usp24

Expression Profile