RNA id: TU343547


Basic Information

Item Value
RNA id TU343547
length 1932
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G290005
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4804560 ~ 4806580 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tTTTGCCAAAAgaattatttattgtatgtaAGGCACTATATTTTAGAGTGAGGTACATTCCACACTTTAACTGAATATAATGTCTCTTTTGATTAACATTTTCAGCCACATTTTCAATTGATTAGTGTCAATAATGAGCAATACAGGCTCCATAATGTTGACCTGGCTAACTTAGGCAACAAAATCAGAAGGCTAATAGCAGAAGATTTGAAATAAGTGCTATATCTACTATTTTATGAATCTTGATGTGCCTGCTGTTTGTTTATGGCTGTGGGGTATAGCGTAGGTATTTTTTCCCAGAAGGCAGTTCCTTGGTGGTGAATCCAGCAGGGAAGAGCTTCTTGGCCTCTTCGTCTGAGAGAGAGGGGATGACCATCACTTCTTCTCCAGGCTTATGGATGAAAACTTCCAGTCCACAGGTGTAGCCACCTTTTTGTTTGCCGTCAGCTGCAGGGAGTCGATGACCCGAAGGATTTCAGTAAAATTGCGCCCTGTAGTGGCAGGATAAAGGATGGACAGCTTCAGCCTCTTATCAGGCCCAACAACAAATACctgtaaagagacaaaaatcTTTCAGAGAGAGTTTTACAAACTATTGTACACAGTGTTGAACATTTTGATGGTTCACATGTATTCAAATGTCCTGTAGTCACAGCAGCATAGCAGCTGTAATGGCTGGTTTTCTTATCATACCCGAAACTGTGCATGCTTGGtttctacatttataaacactgaTACTGAAGGGTGAACATTCCAGTCCTTTGAGGAGGTGTTACTGACTGAAACTGTAGTTCATTTAGGCAAATCACAACAGCCATATCTTTCAGGTAAGCAAGGCagtaatataaaacataatggtACGGCTTTCTTTGATAATCAGCACAAATATGACTGTAAGTGAGCTTATGTGAGGCTATCAAATtgcgcaacagaaaagtgttcaggAGATCACGAGTCCAAATCCCtgtgatgccacagccatctgtggagAGAAGtacaagagagcaaaatttgGCCCTGCTGTCAGTGCTTAAGGTTCTGAacgagagttcaaatcccagcaccaccaaaaagctactgttgggtccttgagcaagaccacTGAACCCGATGTGCTCAGGTGCActagataaaagcatctgcgaaatgaataaatgtaaatcagatcGACATCAAATCAATCACTGGAGtctttgagctcatgtatgtggaagagggcagtttGCACTTTCCTTTGAGTGTGATCAGCAGCCCTATGATGATACTGTGGCTGGCTTTCGTCCTCTCAGAGGAAGCATAGCTCTCACCAGTGGCTGTCGCATGATAAGGTTAAATCTAGCTAGTGAGAGGAacttggcaaatgaccaaactgggagaaaatggtgtttaaaaaacaataaaaattagtGCTTCTCTCATATAGTGCTTATATAAGATGATTCAAATAAAGTCTACATATACTTTCCATGGTATTCTGTAAAAGTTAGAAAGACACCATGTAGGAAATCTTATACACAGAGGAGCGTTGTGGCTATTATTCTAACTGACAATGAAACACACCCAGTTCCAAGTGTATAATAAATGAGTGTTACTGTTCAAACAATTACgcagtggaatcaggtgtgctCCTGCTTGGTTGCAGTGAAAACCTGCAGCCCTTTGAGAATAAGACTGGACACCACTGGTGTAGAATTTACTCTCTAGGGCTTCTATGTAAACTTGGTCTTATTAAGCATAGACAAAGAGGAGATCTAGGACATTAGAAATCACTAGGGAAACGCACACAGCGGGCAGTGAGGGGCATGCCATCTTTGTCCCTCTCATCAGGGTCCAGCATTCCCAGAAGAACCGAGAGTTCACGCTTATCATCTGCTATAATGGGAAATGGCAGAGGACTGCTTGCTGTTTCTGAATGAAGTGTGACCACATCCt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343546 lncRNA upstream 1532 4802813 ~ 4803028 (+) True G290004
XR_004580147.1 lncRNA upstream 6116 4704662 ~ 4798444 (+) False LOC113545162
XR_003404593.2 lncRNA upstream 6116 4785233 ~ 4798444 (+) True LOC113545162
TU343537 lncRNA upstream 48825 4755506 ~ 4755735 (+) True G289995
TU343531 lncRNA upstream 73248 4731085 ~ 4731312 (+) True G289989
TU343551 lncRNA downstream 1960 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA downstream 5589 4812169 ~ 4814796 (+) True G290009
TU343583 lncRNA downstream 89542 4896122 ~ 4896387 (+) True G290028
TU343586 lncRNA downstream 92387 4898967 ~ 4900348 (+) True G290030
TU343587 lncRNA downstream 92387 4898967 ~ 4907812 (+) False G290030
XM_034313899.1 mRNA upstream 162204 4641793 ~ 4642356 (+) True LOC117599796
XM_026944392.2 mRNA upstream 194959 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA upstream 194959 4601055 ~ 4609601 (+) False LOC113545190
XM_026944629.2 mRNA upstream 222779 4561161 ~ 4581781 (+) True fam20b
XM_026944414.2 mRNA upstream 247073 4453316 ~ 4557487 (+) True ralgps2
XM_026944657.2 mRNA downstream 10107 4816687 ~ 4822011 (+) True plpp6
XM_026944557.2 mRNA downstream 16458 4823038 ~ 4831944 (+) False LOC113545285
XM_026944556.2 mRNA downstream 16761 4823341 ~ 4831944 (+) True LOC113545285
XM_034313461.1 mRNA downstream 16761 4823341 ~ 4830815 (+) False LOC113545285
XM_026944559.2 mRNA downstream 16761 4823341 ~ 4830815 (+) False LOC113545285
trnad-guc_22 other upstream 454681 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 466586 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 470931 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 475657 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 477018 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 135371 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 135371 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 135371 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 135372 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 928893 5735473 ~ 5801693 (+) True usp24

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU249428 False 432 lncRNA 0.46 2 CI01000051 3243888 ~ 3244557 (-)