RNA id: TU343552


Basic Information

Item Value
RNA id TU343552
length 2525
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G290009
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4808540 ~ 4814796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATATAGGATTTTGTTCATtctcttttaattttatgtgGCCTTGTGACTTTGTATGGGAAGCCATGTTTAGGAAGTCCAATAAGTCCAATAATTCCATGAGCAAAAGTCACAGTTTTTGCTTAAACTACTATATTTCATTGACATTGTGTCAAAGTCTGAGGTAAGAACAACCAATAGAATTCAAGATTAAGTTCAGTTTAAATATTTCTGCTATTTTGACATGACTCTAGTAGAAGCTTGAAAAattgtgtgtattatgtttAAAGTATGTTGATGTTATGTTCCAAATAGCAAGGTCCTACCCTACTGTTTTATTACTATATTCAAACTTAACAAGATATCAGCCCATCAGATATCAGCCTCGAGTCGACTGTACACGTTTACATAAAATGAACATAGAATATGTATGACTTTGAAGTGCTACATAGATCACATCAAAACATTCGAATGTCAGCAACcttcatttatttgaattataaaGAACACAGTTTGATCTTAGAAATTAGAAGTTATAAAGGAtgcaacgaccaatcactgatcaccattgtttgtccCACCCACAATTCTCTGTTCTCTTTTTTAAGTGAGTTATTCCTTCTGCAACTATTTCCTTTGGGTCAATTTCCTGACTACTTGCTACCACAGAAgttataatattttgtaaataaataataataataataataataataataataataataataatccattttGTATCATACagcagttagttccagtcccctgatttgattggacaagcggTGTTCCGAGAGTGCTGAtgtttagtataacagcactgggacaCTGCACTGTTTGTATCAGTCCTCTTTTCTGTGTTCTTTACACAAAATTCCAATCCTAGCAACAGTTTTGAAaccattactacacttactacggGCTGTCATCAGTCTGTGCATTGGCATGACAACATGCAACGCTcaatccagctgtggcttcttcagAAAATAATTTCGTTaccggagcaaaaataaacaaaatatctagtcatattgtgtctgaaaggttagttacttgatattaatttcttattaataaaactgttgtataaaagcaacatcACAATATCAcggccatgctgatattcagtagaACAGCACTCTTGATCATTTGATATTGTTTAATcctgataaaactctattctcTTCTATTGCAATCTATTCAAGGTGTTTTTAGGGAAACTTCCGTTTTCATATAATGTGGaatttgatatgcaaatgatcatgaccatacatgaatatgcaaattagtctatgaCATCATCTGGGAACTTCTAGTAACTTTTTGAGCAGgatactttcccctgaaaagagttggggaaaacactgtaaaataagACTGTAAAATAAGACCTGAACAAAAGTAattacatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgtccCTTAGgttaaatccttttttaaataaataaataaatagttttcaaaacacacacacacacacacatttgcacatccATTATGCTTTGTAACATAAGACAAGCATTTGATCTTATGTTGCACAAGAGCAGAAGGATGACCTAAATGCAGAAATCCCCTTTCTCCTTGTTTACAGAGAAATTGATGATTGCCTAGAATGAGGAACCTCTCTGGCCCTGTATTCTGCACCATGACACTGCGATTATTCCCCTCTGCAATAACTCCCTATGGGTTTCCAACACCACGTCTGCAACAAACAGTTATCTAATTCCACATTTATTTACTAGGAAGGATATAAGAGCTAGCAAACCCACAGCCATTTGTTTCCTAGACAGAAAACTAGGAATGTAGCTAATGCCTATAATTATGATGTAATAATTTTTGTGACAGAATATCAAGGGATGGGAATGGAAAACTACTCTAAcagcaagaaaacaaaacaagcttTTCTCCATATCACAAGAATATAATTAGCTAGCAGAGCTTTCCTGTGCCTGCCTTAGGTGCACCTGGATCACATGTAGATTAGgatgatatatgtatatatgtatgaatgGAGAGTACTTCAACTTAATCTGATCTGATTTAATCGCAGTTGTGGTGCTTTTCATCTTTGTACAGACTGTAATCACAGCCCACATGGTGGCAATCCAGCTCTACAGTTTGCAGTCTGGGTTAGGTGACTTCTACAATACAGCTATAATTAGCTTTCTGGACAAATTCTTGGAAGCGTCTGATCACAGTGGTGTAAGAATCACACGTGATGGCTAACCAGATCAGGTTGGACGTTACGTGTCGCAGTACAGTAAGGCCACATGAAGTGTCCACTCAATTCACTCAGAGTTGCTACTTACGAGTCGCCCAAGAATTCGTGAAATTTTATCTTGCCAATAGTCGTGTCCGCTTCAAAGTTAGGAAAGACATCTCCTAGCAGGACTCCAGGCATGATGACAcactctctcctcttctcttctcttcttttctctctggaGACACAGCGAGGTGTGAGGGAAAACACGCTGCCTCCACGAAATAAAGCGCTACGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343547 lncRNA upstream 5589 4804560 ~ 4806580 (+) True G290005
TU343546 lncRNA upstream 9141 4802813 ~ 4803028 (+) True G290004
XR_003404593.2 lncRNA upstream 13725 4785233 ~ 4798444 (+) True LOC113545162
TU343537 lncRNA upstream 56434 4755506 ~ 4755735 (+) True G289995
TU343531 lncRNA upstream 80857 4731085 ~ 4731312 (+) True G289989
TU343583 lncRNA downstream 81326 4896122 ~ 4896387 (+) True G290028
TU343586 lncRNA downstream 84171 4898967 ~ 4900348 (+) True G290030
TU343587 lncRNA downstream 84171 4898967 ~ 4907812 (+) False G290030
XR_004580165.1 lncRNA downstream 332389 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 438721 5253517 ~ 5253723 (+) True G290192
XM_034313899.1 mRNA upstream 169813 4641793 ~ 4642356 (+) True LOC117599796
XM_026944392.2 mRNA upstream 202568 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA upstream 202568 4601055 ~ 4609601 (+) False LOC113545190
XM_026944629.2 mRNA upstream 230388 4561161 ~ 4581781 (+) True fam20b
XM_026944414.2 mRNA upstream 254682 4453316 ~ 4557487 (+) True ralgps2
XM_026944657.2 mRNA downstream 1891 4816687 ~ 4822011 (+) True plpp6
XM_026944557.2 mRNA downstream 8242 4823038 ~ 4831944 (+) False LOC113545285
XM_026944556.2 mRNA downstream 8545 4823341 ~ 4831944 (+) True LOC113545285
XM_034313461.1 mRNA downstream 8545 4823341 ~ 4830815 (+) False LOC113545285
XM_026944559.2 mRNA downstream 8545 4823341 ~ 4830815 (+) False LOC113545285
trnad-guc_22 other upstream 462290 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 474195 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 478540 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 483266 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 484627 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 127155 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 127155 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 127155 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 127156 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 920677 5735473 ~ 5801693 (+) True usp24

Expression Profile