RNA id: TU343587


Basic Information

Item Value
RNA id TU343587
length 1360
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G290030
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4898967 ~ 4907812 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAGTTCACAGTCTATTAATGCAATTCCCTTGTTTAAGGAAtggatatttacatataaattaaatacaaaagaaTAGTACATCATTAAAGCGATACAAGTTGATACAAATTTACAGATGTCTCCATGTTACCTCCTGTTAACAATGAAACCATCAAGAGCAACTCACCTATAGGCTATACAAATCTGATTACTCCTCTAACCAACTTCCAGCGGTACTAAATGCAAACACTGTGCTCGTTCCTCCATTTTAAAGCAAGGAAGAGTGTAGGTTTTTAAATCCCATGCACTGGTAACAAGCATATCATTTCCATGTGACCTCTCCAAAAATACTGTCGTTAATTCTCATCCTACTTTATTAGATATATTCAGTGCAAGCCAGATGAGTCATTTTTTTGCCAGCTTTACATTTATGAGTAGTATATAATTTTAAACatgggcattttttttaataagctacAGATTTGAATTTCCACTCATTTCATCACCTCATTGCTGTAAACGTATTTAGATGAGTATTCAGGTTTGCATGGCCTTACACCTTAATGAAGCTTATAAAGGCAGTGAGCCCGTCAAAGTCGAACTTgccaaattattaaaaaatcatttacttAAACCGTTATAAGAAGTGCTCTGTGAAAACCAAAACGCTACAACTCACCACAATTAGCCGTgatcatttcacatttttttttaacacctgCCAAGTAACTGAAAAGTATTTCCTTTTAGAGAAAATGATGATAGAAGCTGATGTTTAAaagcatctctttctctctgccagTGGATCTTGGATTAATTCTAATAACGTGTTTAAAACCTTAATGAGATCATATCAACAGTACAGAGTGAAGGCTTCCTCTTCTGCATGGCACCTAATTCCACtaatgtggggggaaaaaaatgataagtgtgtgtgtgtgtgtgcatgcatttttaacagtttaacatAGAAAAATCTGAACACAGACAACAGCCATTAATCTTCCTTATGTCCTCCCACACTAGGAAGCAGGAGAATGCAGTGATgaggtgcttcaacaatgtatgGACATTTTGTTTACTGAGTGGACAACTATGCATCCAGTGACGTTAGAGGTTTAATCTAATTTAACATTCGCCCCTTTATCcattatttgtttataactctcagtctctctctctctctctctctcacacacacacacacacacactcattgacTCAAATCACCTGAAGAACACTACTACTAGGTGTCTTATTTGTCATACACTAAATGTACAATCACTATAttgtcaaaagtttgtggactcctgaccatcacacccatatgttgttcttccccaaactgttgccacaaagttcgAAGCAccgaattgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343583 lncRNA upstream 2580 4896122 ~ 4896387 (+) True G290028
TU343551 lncRNA upstream 84171 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 84171 4812169 ~ 4814796 (+) True G290009
TU343547 lncRNA upstream 92387 4804560 ~ 4806580 (+) True G290005
TU343546 lncRNA upstream 95939 4802813 ~ 4803028 (+) True G290004
XR_004580165.1 lncRNA downstream 239373 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 345705 5253517 ~ 5253723 (+) True G290192
XR_003404604.2 lncRNA downstream 394818 5302630 ~ 5306902 (+) True LOC113545370
TU344029 lncRNA downstream 636306 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA downstream 672006 5579818 ~ 5588495 (+) True LOC117599803
XM_034313886.1 mRNA upstream 12466 4859323 ~ 4886501 (+) True prrc2c
XM_034313887.1 mRNA upstream 12466 4859323 ~ 4886501 (+) False prrc2c
XM_026944603.2 mRNA upstream 44242 4848284 ~ 4854725 (+) True LOC113545311
XM_034313918.1 mRNA upstream 45075 4847581 ~ 4853892 (+) False LOC113545311
XM_034313936.1 mRNA upstream 52933 4835909 ~ 4846034 (+) False LOC117599802
XM_026944353.2 mRNA downstream 24677 4932489 ~ 4939511 (+) True mettl13
XM_034313596.1 mRNA downstream 34139 4941951 ~ 4979400 (+) False dnm3a
XM_034313593.1 mRNA downstream 34139 4941951 ~ 4979400 (+) False dnm3a
XM_034313598.1 mRNA downstream 34139 4941951 ~ 4979400 (+) False dnm3a
XM_034313595.1 mRNA downstream 34139 4941951 ~ 4979400 (+) False dnm3a
trnad-guc_22 other upstream 549088 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 560993 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 565338 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 570064 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 571425 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 34139 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 34139 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 34139 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 34140 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 827661 5735473 ~ 5801693 (+) True usp24

Expression Profile