Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU344180 |
| length | 1117 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 2 |
| gene id | G290562 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 5732731 ~ 5734300 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU344031 | lncRNA | upstream | 77044 | 5647377 ~ 5655687 (+) | True | G290419 |
| TU344029 | lncRNA | upstream | 133724 | 5544118 ~ 5599007 (+) | True | G290417 |
| XR_004580164.1 | lncRNA | upstream | 144236 | 5579818 ~ 5588495 (+) | True | LOC117599803 |
| XR_003404604.2 | lncRNA | upstream | 425829 | 5302630 ~ 5306902 (+) | True | LOC113545370 |
| TU343799 | lncRNA | upstream | 479008 | 5253517 ~ 5253723 (+) | True | G290192 |
| TU344187 | lncRNA | downstream | 67498 | 5801798 ~ 5804340 (+) | True | G290566 |
| TU344188 | lncRNA | downstream | 70376 | 5804676 ~ 5805588 (+) | True | G290567 |
| TU344190 | lncRNA | downstream | 72706 | 5807006 ~ 5807916 (+) | True | G290569 |
| XR_004580161.1 | lncRNA | downstream | 81602 | 5815902 ~ 5819066 (+) | False | LOC117599801 |
| XR_004580162.1 | lncRNA | downstream | 81609 | 5815909 ~ 5819066 (+) | True | LOC117599801 |
| XM_026944339.1 | mRNA | upstream | 157161 | 5542956 ~ 5575570 (+) | True | plpp3 |
| XM_026944340.1 | mRNA | upstream | 157751 | 5542956 ~ 5574980 (+) | False | plpp3 |
| XM_034313904.1 | mRNA | upstream | 212098 | 5505839 ~ 5520633 (+) | True | LOC113545193 |
| XM_026944631.2 | mRNA | upstream | 230327 | 5344065 ~ 5502404 (+) | False | dab1a |
| XM_026944585.2 | mRNA | downstream | 1174 | 5735474 ~ 5801693 (+) | False | usp24 |
| XM_026944586.2 | mRNA | downstream | 1174 | 5735474 ~ 5801693 (+) | False | usp24 |
| XM_034313451.1 | mRNA | downstream | 109733 | 5844033 ~ 5856556 (+) | False | dhcr24 |
| XM_026944360.2 | mRNA | downstream | 109733 | 5844033 ~ 5856556 (+) | True | dhcr24 |
| XM_026944357.2 | mRNA | downstream | 109734 | 5844034 ~ 5856556 (+) | False | dhcr24 |
| XR_004580098.1 | other | upstream | 753331 | 4941951 ~ 4979400 (+) | False | dnm3a |
| XR_004580099.1 | other | upstream | 753331 | 4941952 ~ 4979400 (+) | False | dnm3a |
| XR_004580101.1 | other | upstream | 753876 | 4941951 ~ 4978855 (+) | False | dnm3a |
| XR_004580100.1 | other | upstream | 758670 | 4941951 ~ 4974061 (+) | False | dnm3a |
| trnad-guc_22 | other | upstream | 1382852 | 4349808 ~ 4349879 (+) | True | trnad-guc_22 |
| XR_004580141.1 | other | downstream | 1173 | 5735473 ~ 5801693 (+) | True | usp24 |
| XR_004580167.1 | other | downstream | 1278442 | 7012742 ~ 7019686 (+) | False | tdh |
| trnac-gca_25 | other | downstream | 1855068 | 7589368 ~ 7589439 (+) | True | trnac-gca_25 |
| trnaa-cgc_5 | other | downstream | 2148918 | 7883218 ~ 7883289 (+) | True | trnaa-cgc_5 |
| trnaa-cgc_6 | other | downstream | 2150345 | 7884645 ~ 7884716 (+) | True | trnaa-cgc_6 |
